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(-) Description

Title :  TWO FIBRONECTIN TYPE-III DOMAIN SEGMENT FROM CHICKEN TENASCIN
 
Authors :  K. Piontek, D. A. Bisig
Date :  17 Jun 99  (Deposition) - 28 Jun 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tenascin, Fibronectin Type-Iii, Heparin, Extracellular Matrix, Adhesion, Fusion Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bisig, P. Weber, L. Vaughan, K. H. Winterhalter, K. Piontek
Purification, Crystallization And Preliminary Crystallographic Studies Of A Two Fibronectin Type-Iii Domain Segment From Chicken Tenascin Encompassing The Heparin- And Contactin-Binding Regions.
Acta Crystallogr. , Sect. D V. 55 1069 1999
PubMed-ID: 10216309  |  Reference-DOI: 10.1107/S090744499900284X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (TENASCIN)
    Cellular Location: EXTRACELLULAR MATRIX
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOPLASM
    Expression System Plasmid: PDS9/56
    Expression System Strain: M15
    Expression System Taxid: 562
    Fragment: FNIII DOMAINS 5-6
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1QR4)

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1PHSAUTHORLYS A:26 , ARG A:31 , LYS A:41 , LYS A:72 , GLY A:73 , ARG A:74 , HIS A:75 , LYS A:76 , SER A:77 , LYS A:78 , LYS A:83PUTITIVE HEPARIN BINDING SITE
2PHTAUTHORLYS B:26 , ARG B:31 , LYS B:41 , LYS B:72 , GLY B:73 , ARG B:74 , HIS B:75 , LYS B:76 , SER B:77 , LYS B:78 , LYS B:83PUTITIVE HEPARIN BINDING SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QR4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QR4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QR4)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.TENA_CHICK595-685
776-866
686-775
958-1046
 
867-957
1047-1138
1319-1408
 
1229-1318
 
1139-1228
1409-1495
1496-1584		  6-
-
-
A:2-86
B:2-86
-
-
A:90-175
B:90-175
A:87-89
B:87-89
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1QR4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
 aligned with TENA_CHICK | P10039 from UniProtKB/Swiss-Prot  Length:1808

    Alignment length:448
                                   966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396        
          TENA_CHICK    957 DNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTEEEPELGNLSVSETGWDGFQLTWTAADGAYENFVIQVQQSDNPEETWNITVPGGQHSVNVTGLKANTPYNVTLYGVIRGYRTKPLYVETTTGAHPEVGELTVSDITPESFNLSWTTTNGDFDAFTIEIIDSNRLLEPMEFNISGNSRTAHISGLSPSTDFIVYLYGISHGFRTQAISAAATTEAEPEVDNLLVSDATPDGFRLSWTADDGVFDSFVLKIRDTKRKSDPLELIVPGHERTHDITGLKEGTEYEIELYGVSSGRRSQPINSVATTVVGSPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT 1404
               SCOP domains d1qr4a1 A:1-87 Tenascin                                                                                                                                                                                                                                                                                                                                                 d1qr4a2 A:88-175 Tenascin                                                                SCOP domains
               CATH domains 1qr4A01 A:1-87 Immunoglobulins                                                                                                                                                                                                                                                                                                                                          1qr4A02 A:88-175 Immunoglobulins                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.....eeeee.........eeeeeee.....eeeeee.....eeeee......eeeeeeeee........eeeeee.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......eeee......eeeee........eeeeeeee......eeeeee....eeee.......eeeeeeeee........eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FFN3  PDB: A:2-86 UniProt: 958-1046                                                       FN3  PDB: - UniProt: 1047-1138                                                              FN3  PDB: - UniProt: 1139-1228                                                            FN3  PDB: A:87-89 UniProt: 1229-1318                                                      FN3  PDB: A:90-175 UniProt: 1319-1408                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1qr4 A    1 DNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGSPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT  175
                                    10        20        30        40        50        60        70        80     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -        87        97       107       117       127       137       147       157       167        
                                                                                                                86                                                                                                                                                                                                                                                                                87                                                                                        


Chain B from PDB  Type:PROTEIN  Length:175
 aligned with TENA_CHICK | P10039 from UniProtKB/Swiss-Prot  Length:1808

    Alignment length:448
                                   966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396        
          TENA_CHICK    957 DNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTEEEPELGNLSVSETGWDGFQLTWTAADGAYENFVIQVQQSDNPEETWNITVPGGQHSVNVTGLKANTPYNVTLYGVIRGYRTKPLYVETTTGAHPEVGELTVSDITPESFNLSWTTTNGDFDAFTIEIIDSNRLLEPMEFNISGNSRTAHISGLSPSTDFIVYLYGISHGFRTQAISAAATTEAEPEVDNLLVSDATPDGFRLSWTADDGVFDSFVLKIRDTKRKSDPLELIVPGHERTHDITGLKEGTEYEIELYGVSSGRRSQPINSVATTVVGSPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT 1404
               SCOP domains d1qr4b1 B:1-87 Tenascin                                                                                                                                                                                                                                                                                                                                                 d1qr4b2 B:88-175 Tenascin                                                                SCOP domains
               CATH domains 1qr4B01 B:1-87 Immunoglobulins                                                                                                                                                                                                                                                                                                                                          1qr4B02 B:88-175 Immunoglobulins                                                         CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-1qr4B01 B:89-168                                                            ------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-1qr4B02 B:89-168                                                            ------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-1qr4B03 B:89-168                                                            ------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-1qr4B04 B:89-168                                                            ------- Pfam domains (4)
         Sec.struct. author ......eee......eeee.........eeeeeee.....eeeeee.....eeee.......eeeeeeeee........eeeeee.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......eeeee......eeeeee.......eeeeeeee......eeeeee....eeee.......eeeeeeeee........eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FFN3  PDB: B:2-86 UniProt: 958-1046                                                       FN3  PDB: - UniProt: 1047-1138                                                              FN3  PDB: - UniProt: 1139-1228                                                            FN3  PDB: B:87-89 UniProt: 1229-1318                                                      FN3  PDB: B:90-175 UniProt: 1319-1408                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1qr4 B    1 DNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGST---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGSPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT  175
                                    10        20        30        40        50        60        70        80     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -        87        97       107       117       127       137       147       157       167        
                                                                                                                86                                                                                                                                                                                                                                                                                87
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: E-set (290)
(-)
Family: fn3 (66)
(-)
Gallus gallus (Chicken) (1)
1afn3-1qr4B01B:89-168
1bfn3-1qr4B02B:89-168
1cfn3-1qr4B03B:89-168
1dfn3-1qr4B04B:89-168

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TENA_CHICK | P10039)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
cellular component
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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  1qr4
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 Related Entries

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