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(-) Description

Title :  SOLUTION STRUCTURE OF ALPHA2D
 
Authors :  R. B. Hill, W. F. Degrado
Date :  01 Jun 99  (Deposition) - 09 Jun 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (16x)
Keywords :  De Novo Design, Protein Design, Protein Folding, Bisecting U Motif, Four-Helix Bundle, Helix-Turn-Helix, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. B. Hill, W. F. Degrado
Solution Structure Of Alpha2D, A Nativelike De Novo Designed Protein
J. Am. Chem. Soc. V. 120 1138 1998
PubMed: search  |  Reference-DOI: 10.1021/JA9733649
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ALPHA2D)
    Chains: A, B
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE WAS DESIGNED TO FOLD INTO A HELIX-TURN-HELIX PEPTIDE THAT DIMERIZES TO FORM A FOUR-HELIX BUNDLE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (16x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1QP6)

(-) Sites  (0, 0)

(no "Site" information available for 1QP6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QP6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QP6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QP6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QP6)

(-) Exons   (0, 0)

(no "Exon" information available for 1QP6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains d1qp6a_ A: alpha2d                  SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  1qp6 A  1 GEVEELEKKFKELWKGPRRGEIEELHKKFHELIKG 35
                                    10        20        30     


Chain B from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains d1qp6b_ B: alpha2d                  SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  1qp6 B  1 GEVEELEKKFKELWKGPRRGEIEELHKKFHELIKG 35
                                    10        20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1QP6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1QP6)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1QP6)

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  1qp6
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 Related Entries

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