1Q33 - JenaLib

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:172 , GLY A:214 , GLY A:215 , VAL A:269 , ASP A:271 , ARG A:273 , MSE A:280 , HIS A:324 , HOH A:803	BINDING SITE FOR RESIDUE BGC A 400
2	AC2	SOFTWARE	TRP A:91 , GLN A:92 , ASP A:93 , HOH A:613 , HOH A:781 , HOH A:792	BINDING SITE FOR RESIDUE SO4 A 500
3	AC3	SOFTWARE	PRO A:108 , ARG A:109 , LYS A:179 , HOH A:714	BINDING SITE FOR RESIDUE SO4 A 501
4	AC4	SOFTWARE	GLN A:114 , ILE A:115 , SER A:116 , ARG A:146 , TRP A:165 , HOH A:631	BINDING SITE FOR RESIDUE SO4 A 502
5	AC5	SOFTWARE	GLU A:126 , LYS A:127 , LYS A:134	BINDING SITE FOR RESIDUE SO4 A 503
6	AC6	SOFTWARE	LYS A:203 , TRP A:210 , LYS A:308 , LYS A:310 , HOH A:732	BINDING SITE FOR RESIDUE SO4 A 504
7	AC7	SOFTWARE	LYS A:329 , TRP A:339 , HOH A:730	BINDING SITE FOR RESIDUE SO4 A 505

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (7, 7)

Asymmetric/Biological Unit (7, 7)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000302174	1a	ENSE00001135449	chr4:88343734-88344164	431	NUDT9_HUMAN	1-36	36	0	-	-
1.3b	ENST00000302174	3b	ENSE00001759594	chr4:88356133-88356372	240	NUDT9_HUMAN	36-116	81	1	A:59-116	58
1.4	ENST00000302174	4	ENSE00001175754	chr4:88359429-88359524	96	NUDT9_HUMAN	116-148	33	1	A:116-148	33
1.5a	ENST00000302174	5a	ENSE00001175744	chr4:88362981-88363067	87	NUDT9_HUMAN	148-177	30	1	A:148-177	30
1.7	ENST00000302174	7	ENSE00001175734	chr4:88370294-88370405	112	NUDT9_HUMAN	177-214	38	1	A:177-214	38
1.8b	ENST00000302174	8b	ENSE00001175727	chr4:88372741-88372887	147	NUDT9_HUMAN	215-263	49	1	A:215-263	49
1.9b	ENST00000302174	9b	ENSE00001175718	chr4:88375523-88375607	85	NUDT9_HUMAN	264-292	29	1	A:264-292	29
1.10b	ENST00000302174	10b	ENSE00001556821	chr4:88378995-88379497	503	NUDT9_HUMAN	292-350	59	1	A:292-350	59

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:292
 aligned with NUDT9_HUMAN | Q9BW91 from UniProtKB/Swiss-Prot  Length:350

    Alignment length:292
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348  
          NUDT9_HUMAN    59 ENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350
               SCOP domains d1q33a_ A: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------1q33A02 A:169-269,A:281-350 Nucleoside Triphosphate Pyrophosphohydrolase                             -----------1q33A02 A:169-269,A:281-350                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------NUDIX-1q33A01 A:181-334                                                                                                                                   ---------------- Pfam domains
         Sec.struct. author ....hhhhh.............hhhhh...........eeeehhhhhh....................ee..ee.........ee..ee........eeeee.....eeeeeeeeeeeee..................eeeeeee......ee...ee.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeeeee.........eeeeeeeeeeee..................eeeeee.........hhhhhhhhhhhhhh.......hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------NUDIX  PDB: A:178-334 UniProt: 178-334                                                                                                                       ---------------- PROSITE
           Transcript 1 (1) Exon 1.3b  PDB: A:59-116 UniProt: 36-116 [INCOMPLETE]     -------------------------------Exon 1.5a  PDB: A:148-177     -------------------------------------Exon 1.8b  PDB: A:215-263 UniProt: 215-263       ----------------------------Exon 1.10b  PDB: A:292-350 UniProt: 292-350                 Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------Exon 1.4  PDB: A:116-148         ----------------------------Exon 1.7  PDB: A:177-214              -------------------------------------------------Exon 1.9b  PDB: A:264-292    ---------------------------------------------------------- Transcript 1 (2)
                 1q33 A  59 ENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKImHPVSGKHILQFVAIKRKDCGEWAIPGGmVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWmETEAVNYHDETGEImDNLmLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278 |     288      |298|      308       318       328       338       348  
                                                                                                                                                           188-MSE                     216-MSE                                                         280-MSE        295-MSE                                                   
                                                                                                                                                                                                                                                                          299-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (NUDT9_HUMAN | Q9BW91)

molecular function
	GO:0047631	ADP-ribose diphosphatase activity	Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate.
	GO:0019144	ADP-sugar diphosphatase activity	Catalysis of the reaction: ADP-sugar + H2O = AMP + sugar 1-phosphate.
	GO:0043262	adenosine-diphosphatase activity	Catalysis of the reaction: ADP + H2O = AMP + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0046032	ADP catabolic process	The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate.
	GO:0046709	IDP catabolic process	The chemical reactions and pathways resulting in the breakdown of IDP, inosine 5'-diphosphate.
	GO:0034656	nucleobase-containing small molecule catabolic process	The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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		Ser A:68 - Pro A:69	[ RasMol ]

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	1q33
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	NUDT9_HUMAN \| Q9BW91
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	3.6.1.13
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (7, 7)