1PMY - JenaLib

Title :   REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION

Authors :   T. Inoue, Y. Kai, S. Harada, N. Kasai, Y. Ohshiro, S. Suzuki, T. Kohzuma, J. Tobari

Date :   28 Jan 94 (Deposition) - 31 Jul 94 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Electron Transfer(Cuproprotein) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Inoue, Y. Kai, S. Harada, N. Kasai, Y. Ohshiro, S. Suzuki, T. Kohzuma, J. Tobari
Refined Crystal Structure Of Pseudoazurin From Methylobacterium Extorquens Am1 At 1. 5 A Resolution.
Acta Crystallogr. , Sect. D V. 50 317 1994
PubMed-ID: 15299445 | Reference-DOI: 10.1107/S0907444994000260
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:123
 aligned with AZUP_METEA | P04171 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:123
                                    35        45        55        65        75        85        95       105       115       125       135       145   
           AZUP_METEA    26 DEVAVKMLNSGPGGMMVFDPALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCAPHYMMGMVALVVVGDKRDNLEAAKSVQHNKLTQKRLDPLFAQIQ 148
               SCOP domains d1pmya_ A: Pseudoazurin                                                                                                     SCOP domains
               CATH domains 1pmyA00 A:1-123 Cupredoxins -  blue copper proteins                                                                         CATH domains
               Pfam domains ----Copper-bind-1pmyA01 A:5-93                                                               ------------------------------ Pfam domains
         Sec.struct. author eeeeeeee........eee.eeeee...eeeeeee......eee...........eee....eeeeee...eeeeeee.......eeeeeee......hhhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------COPPER_BLUE    ------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pmy A   1 DEVAVKMLNSGPGGMMVFDPALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCAPHYMMGMVALVVVGDKRDNLEAAKSVQHNKLTQKRLDPLFAQIQ 123
                                    10        20        30        40        50        60        70        80        90       100       110       120

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (AZUP_METEA | P04171)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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