1PK8 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RAT SYNAPSIN I C DOMAIN COMPLEXED TO CA.ATP

Authors :   C. A. Brautigam, Y. Chelliah, J. Deisenhofer

Date :   05 Jun 03 (Deposition) - 23 Mar 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Atp Binding, Atp Grasp, Calcium (Ii) Ion, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Brautigam, Y. Chelliah, J. Deisenhofer
Tetramerization And Atp Binding By A Protein Comprising The A, B, And C Domains Of Rat Synapsin I.
J. Biol. Chem. V. 279 11948 2004
PubMed-ID: 14688264 | Reference-DOI: 10.1074/JBC.M312015200
(for further references see the PDB file header)

Molecule 1 - RAT SYNAPSIN I
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PSYNABC
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PGEX
	Fragment	:	A, B & C DOMAINS
	Gene	:	SYN1
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	ATP	8	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CA	8	Ligand/Ion	CALCIUM ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ATP	4	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	ATP	4	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:373 , GLU A:386 , ATP A:800	BINDING SITE FOR RESIDUE CA A 817
02	AC2	SOFTWARE	GLU B:373 , GLU B:386 , ATP B:801	BINDING SITE FOR RESIDUE CA B 817
03	AC3	SOFTWARE	GLU C:373 , GLU C:386 , ATP C:802	BINDING SITE FOR RESIDUE CA C 817
04	AC4	SOFTWARE	GLU D:373 , GLU D:386 , ATP D:803	BINDING SITE FOR RESIDUE CA D 817
05	AC5	SOFTWARE	GLU E:373 , GLU E:386 , ATP E:804	BINDING SITE FOR RESIDUE CA E 817
06	AC6	SOFTWARE	GLU F:373 , GLU F:386 , ATP F:805	BINDING SITE FOR RESIDUE CA F 817
07	AC7	SOFTWARE	GLU G:373 , GLU G:386 , ATP G:806	BINDING SITE FOR RESIDUE CA G 817
08	AC8	SOFTWARE	GLU H:373 , GLU H:386 , ATP H:807 , HOH H:842	BINDING SITE FOR RESIDUE CA H 817
09	AC9	SOFTWARE	LYS A:225 , VAL A:267 , LYS A:269 , HIS A:274 , SER A:275 , GLY A:276 , LYS A:279 , GLU A:305 , PRO A:306 , ILE A:308 , ASP A:313 , ARG A:328 , TRP A:335 , LYS A:336 , THR A:337 , ASN A:338 , GLU A:373 , LEU A:375 , GLU A:386 , VAL A:388 , CA A:817 , HOH A:831 , HOH A:859 , HOH A:903 , HOH A:916 , HOH A:935	BINDING SITE FOR RESIDUE ATP A 800
10	BC1	SOFTWARE	LYS B:225 , VAL B:267 , LYS B:269 , HIS B:274 , SER B:275 , GLY B:276 , LYS B:279 , GLU B:305 , PRO B:306 , PHE B:307 , ILE B:308 , ASP B:313 , ARG B:328 , TRP B:335 , LYS B:336 , THR B:337 , ASN B:338 , GLU B:373 , LEU B:375 , ILE B:385 , GLU B:386 , VAL B:388 , CA B:817 , HOH B:842 , HOH B:890 , HOH B:900	BINDING SITE FOR RESIDUE ATP B 801
11	BC2	SOFTWARE	LYS C:225 , ILE C:247 , VAL C:267 , LYS C:269 , HIS C:274 , SER C:275 , GLY C:276 , LYS C:279 , GLU C:305 , PRO C:306 , PHE C:307 , ILE C:308 , ARG C:328 , TRP C:335 , GLU C:373 , LEU C:375 , GLU C:386 , CA C:817	BINDING SITE FOR RESIDUE ATP C 802
12	BC3	SOFTWARE	LYS D:225 , ILE D:247 , VAL D:267 , LYS D:269 , HIS D:274 , SER D:275 , GLY D:276 , LYS D:279 , GLU D:305 , PRO D:306 , PHE D:307 , ILE D:308 , ASP D:313 , ARG D:328 , TRP D:335 , LYS D:336 , THR D:337 , ASN D:338 , GLU D:373 , LEU D:375 , ILE D:385 , GLU D:386 , CA D:817 , HOH D:869 , HOH D:874 , HOH D:892	BINDING SITE FOR RESIDUE ATP D 803
13	BC4	SOFTWARE	LYS E:225 , ILE E:247 , VAL E:267 , LYS E:269 , HIS E:274 , SER E:275 , GLY E:276 , LYS E:279 , GLU E:305 , PRO E:306 , PHE E:307 , ILE E:308 , ARG E:328 , TRP E:335 , LYS E:336 , THR E:337 , GLU E:373 , LEU E:375 , GLU E:386 , CA E:817 , HOH E:870	BINDING SITE FOR RESIDUE ATP E 804
14	BC5	SOFTWARE	LYS F:225 , ILE F:247 , VAL F:267 , LYS F:269 , ALA F:273 , HIS F:274 , SER F:275 , GLY F:276 , LYS F:279 , GLU F:305 , PRO F:306 , PHE F:307 , ILE F:308 , ASP F:313 , ARG F:328 , TRP F:335 , LYS F:336 , THR F:337 , GLU F:373 , LEU F:375 , GLU F:386 , VAL F:388 , CA F:817 , HOH F:848	BINDING SITE FOR RESIDUE ATP F 805
15	BC6	SOFTWARE	LYS G:225 , ILE G:247 , VAL G:267 , LYS G:269 , HIS G:274 , SER G:275 , GLY G:276 , LYS G:279 , GLU G:305 , PRO G:306 , PHE G:307 , ILE G:308 , ASP G:313 , ARG G:328 , TRP G:335 , LYS G:336 , THR G:337 , ASN G:338 , GLU G:373 , LEU G:375 , GLU G:386 , CA G:817 , HOH G:880 , HOH G:885	BINDING SITE FOR RESIDUE ATP G 806
16	BC7	SOFTWARE	LYS H:225 , ILE H:247 , VAL H:267 , LYS H:269 , HIS H:274 , SER H:275 , GLY H:276 , LYS H:279 , GLU H:305 , PRO H:306 , PHE H:307 , ILE H:308 , ARG H:328 , TRP H:335 , GLU H:373 , LEU H:375 , GLU H:386 , VAL H:388 , CA H:817 , HOH H:842 , HOH H:855	BINDING SITE FOR RESIDUE ATP H 807
17	BC8	SOFTWARE	HIS A:217 , PHE A:364 , HOH A:879 , HOH A:902 , HIS B:217 , PHE B:364	BINDING SITE FOR RESIDUE EDO A 818
18	BC9	SOFTWARE	ASP B:120 , THR B:124 , TRP B:126 , ARG B:186 , HOH B:896	BINDING SITE FOR RESIDUE EDO B 819

(no "SS Bond" information available for 1PK8)

Asymmetric Unit

No.	Residues
1	Val A:213	-	Asn A:214
2	Tyr A:264	-	Pro A:265
3	Val B:213	-	Asn B:214
4	Tyr B:264	-	Pro B:265
5	Val C:213	-	Asn C:214
6	Tyr C:264	-	Pro C:265
7	Val D:213	-	Asn D:214
8	Tyr D:264	-	Pro D:265
9	Val E:213	-	Asn E:214
10	Tyr E:264	-	Pro E:265
11	Val F:213	-	Asn F:214
12	Tyr F:264	-	Pro F:265
13	Val G:213	-	Asn G:214
14	Tyr G:264	-	Pro G:265
15	Val H:213	-	Asn H:214
16	Tyr H:264	-	Pro H:265

(no "SAP(SNP)/Variant" information available for 1PK8)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SYNAPSIN_2	PS00416	Synapsins signature 2.	SYN1_RAT	271-281	8	A:271-281 B:271-281 C:271-281 D:271-281 E:271-281 F:271-281 G:271-281 H:271-281

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SYNAPSIN_2	PS00416	Synapsins signature 2.	SYN1_RAT	271-281	4	A:271-281 B:271-281 C:271-281 D:271-281 - - - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SYNAPSIN_2	PS00416	Synapsins signature 2.	SYN1_RAT	271-281	4	- - - - E:271-281 F:271-281 G:271-281 H:271-281

Asymmetric Unit (8, 64)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000014250	1	ENSRNOE00000447489	X:12512210-12512217	8	SYN1_RAT	1-3	3	0	-	-
1.2	ENSRNOT00000014250	2	ENSRNOE00000097479	X:12512244-12512301	58	SYN1_RAT	3-22	20	0	-	-
1.3	ENSRNOT00000014250	3	ENSRNOE00000097614	X:12512392-12512483	92	SYN1_RAT	23-53	31	0	-	-
1.4	ENSRNOT00000014250	4	ENSRNOE00000097742	X:12513717-12513873	157	SYN1_RAT	53-105	53	0	-	-
1.5	ENSRNOT00000014250	5	ENSRNOE00000097879	X:12515168-12515257	90	SYN1_RAT	106-135	30	8	A:112-135 B:113-135 C:113-135 D:112-135 E:112-135 F:113-135 G:112-135 H:112-135	24 23 23 24 24 23 24 24
1.6	ENSRNOT00000014250	6	ENSRNOE00000098024	X:12551213-12551275	63	SYN1_RAT	136-156	21	8	A:136-156 B:136-156 C:136-156 D:136-156 E:136-156 F:136-156 G:136-156 H:136-156	21 21 21 21 21 21 21 21
1.7	ENSRNOT00000014250	7	ENSRNOE00000098221	X:12552134-12552276	143	SYN1_RAT	157-204	48	8	A:157-204 B:157-204 (gaps) C:157-204 (gaps) D:157-204 (gaps) E:157-204 (gaps) F:157-204 (gaps) G:157-204 (gaps) H:157-204 (gaps)	48 48 48 48 48 48 48 48
1.8	ENSRNOT00000014250	8	ENSRNOE00000098378	X:12552359-12552433	75	SYN1_RAT	204-229	26	8	A:204-229 B:204-229 C:204-229 D:204-229 E:204-229 F:204-229 G:204-229 H:204-229	26 26 26 26 26 26 26 26
1.9	ENSRNOT00000014250	9	ENSRNOE00000098563	X:12552528-12552630	103	SYN1_RAT	229-263	35	8	A:229-263 B:229-263 C:229-263 D:229-263 E:229-263 F:229-263 G:229-263 H:229-263	35 35 35 35 35 35 35 35
1.10	ENSRNOT00000014250	10	ENSRNOE00000098754	X:12553682-12553822	141	SYN1_RAT	264-310	47	8	A:264-310 B:264-310 C:264-310 D:264-310 E:264-310 F:264-310 G:264-310 H:264-310	47 47 47 47 47 47 47 47
1.11	ENSRNOT00000014250	11	ENSRNOE00000099054	X:12554138-12554225	88	SYN1_RAT	311-340	30	8	A:311-340 B:311-340 (gaps) C:311-336 (gaps) D:311-340 E:311-337 (gaps) F:311-337 (gaps) G:311-338 (gaps) H:311-336 (gaps)	30 30 26 30 27 27 28 26
1.12b	ENSRNOT00000014250	12b	ENSRNOE00000289921	X:12554323-12554914	592	SYN1_RAT	340-537	198	8	A:340-417 B:340-417 C:344-417 D:340-417 E:344-416 F:344-417 G:342-417 H:344-417	78 78 74 78 73 74 76 74
1.13	ENSRNOT00000014250	13	ENSRNOE00000209968	X:12555820-12556160	341	SYN1_RAT	537-581	45	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:306
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:306
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
             SYN1_RAT   112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8a1 A:112-213 Synapsin I                                                                          d1pk8a2 A:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8A02 A:112-214,A:394-406  [code=3.40.50.20, no name defined]                                        1pk8A03 A:215-247,A:308-393      1pk8A01 A:248-307 ATP-grasp fold, A domain                  1pk8A03 A:215-247,A:308-393 ATP-grasp fold, B domain                                  1pk8A02      ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhh..ee...eeeeeeeehhh.eeeeee....eeeeeeeee..eeeeeee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeeeee...........eeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:112-135Exon 1.6             Exon 1.7  PDB: A:157-204 UniProt: 157-204       ------------------------Exon 1.9  PDB: A:229-263           Exon 1.10  PDB: A:264-310 UniProt: 264-310     Exon 1.11  PDB: A:311-340     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.8  PDB: A:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: A:340-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 A 112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411

Chain B from PDB  Type:PROTEIN  Length:292
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:305
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412     
             SYN1_RAT   113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8b1 B:113-213 Synapsin I                                                                         d1pk8b2 B:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8B02 B:113-214,B:394-406  [code=3.40.50.20, no name         defined]                               1pk8B03 B:215-247,B:308-393      1pk8B01 B:248-307 ATP-grasp fold, A domain                  1pk8B03 B:215-247,B:30     8-393 ATP-grasp fold, B domain                             1pk8B02      ----------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhh..ee...eeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeeee-----........eeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: B:113-13Exon 1.6             Exon 1.7  PDB: B:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: B:229-263           Exon 1.10  PDB: B:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------Exon 1.8  PDB: B:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: B:340-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 B 113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRT-----WKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   122       132       142       152       162   |     -  |    182       192       202       212       222       232       242       252       262       272       282       292       302       312       322      |  -  |    342       352       362       372       382       392       402       412     
                                                                               166      175                                                                                                                                                       329   335

Chain C from PDB  Type:PROTEIN  Length:285
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:305
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412     
             SYN1_RAT   113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8c1 C:113-213 Synapsin I                                                                         d1pk8c2 C:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8C02 C:113-214,C:394-406  [code=3.40.50.20, no name         defined]                               1pk8C03 C:215-247,C:308-393      1pk8C01 C:248-307 ATP-grasp fold, A domain                  1pk8C03 C:215-247,C:30     8-       393 ATP-grasp fold, B domain                      1pk8C02      ----------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhh..eehhheeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeee.-----..-------.eee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: C:113-13Exon 1.6             Exon 1.7  PDB: C:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: C:229-263           Exon 1.10  PDB: C:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------Exon 1.8  PDB: C:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: C:344-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 C 113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRT-----WK-------LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   122       132       142       152       162   |     -  |    182       192       202       212       222       232       242       252       262       272       282       292       302       312       322      |  -  ||     - |     352       362       372       382       392       402       412     
                                                                               166      175                                                                                                                                                       329   335|     344                                                                         
                                                                                                                                                                                                                                                         336

Chain D from PDB  Type:PROTEIN  Length:300
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:306
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
             SYN1_RAT   112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8d1 D:112-213 Synapsin I                                                                          d1pk8d2 D:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8D02 D:112-214,D:394-406  [code=3.40.50.20, no name d      efined]                                  1pk8D03 D:215-247,D:308-393      1pk8D01 D:248-307 ATP-grasp fold, A domain                  1pk8D03 D:215-247,D:308-393 ATP-grasp fold, B domain                                  1pk8D02      ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhh..eehhheeeeeeeehhh.eeeeee....eeeee..------..eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeeeee...........eeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: D:112-135Exon 1.6             Exon 1.7  PDB: D:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: D:229-263           Exon 1.10  PDB: D:264-310 UniProt: 264-310     Exon 1.11  PDB: D:311-340     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.8  PDB: D:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: D:340-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 D 112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEV------VVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   121       131       141       151       161     |   -  |    181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
                                                                                 167    174

Chain E from PDB  Type:PROTEIN  Length:286
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:305
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411     
             SYN1_RAT   112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQ 416
               SCOP domains d1pk8e1 E:112-213 Synapsin I                                                                          d1pk8e2 E:214-416 Synapsin                                                                                                                                                                                  SCOP domains
               CATH domains 1pk8E02 E:112-214,E:394-406  [code=3.40.50.20, no name         defined]                                1pk8E03 E:215-247,E:308-393      1pk8E01 E:248-307 ATP-grasp fold, A domain                  1pk8E03 E:215-247,E:30     8-3      93 ATP-grasp fold, B domain                       1pk8E02      ---------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhh..ee...eeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeee.-----...------.eee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee.........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: E:112-135Exon 1.6             Exon 1.7  PDB: E:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: E:229-263           Exon 1.10  PDB: E:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ---------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.8  PDB: E:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: E:344-416 UniProt: 340-537 [INCOMPLETE]                      Transcript 1 (2)
                 1pk8 E 112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRT-----WKT------LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQ 416
                                   121       131       141       151       161    |    -   |   181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       | -   | |   -  |    351       361       371       381       391       401       411     
                                                                                166      175                                                                                                                                                       329   335 |    344                                                                        
                                                                                                                                                                                                                                                           337

Chain F from PDB  Type:PROTEIN  Length:286
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:305
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412     
             SYN1_RAT   113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8f1 F:113-213 Synapsin I                                                                         d1pk8f2 F:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8F02 F:113-214,F:394-406  [code=3.40.50.20, no name         defined]                               1pk8F03 F:215-247,F:308-393      1pk8F01 F:248-307 ATP-grasp fold, A domain                  1pk8F03 F:215-247,F:30     8-3      93 ATP-grasp fold, B domain                       1pk8F02      ----------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhh..ee...eeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeee.-----...------.eee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: F:113-13Exon 1.6             Exon 1.7  PDB: F:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: F:229-263           Exon 1.10  PDB: F:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------Exon 1.8  PDB: F:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: F:344-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 F 113 ARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRT-----WKT------LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   122       132       142       152       162   |     -  |    182       192       202       212       222       232       242       252       262       272       282       292       302       312       322      |  -  | |    - |     352       362       372       382       392       402       412     
                                                                               166      175                                                                                                                                                       329   335 |    344                                                                         
                                                                                                                                                                                                                                                          337

Chain G from PDB  Type:PROTEIN  Length:293
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:306
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
             SYN1_RAT   112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8g1 G:112-213 Synapsin I                                                                          d1pk8g2 G:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8G02 G:112-214,G:394-406  [code=3.40.50.20, no name         defined]                                1pk8G03 G:215-247,G:308-393      1pk8G01 G:248-307 ATP-grasp fold, A domain                  1pk8G03 G:215-247,G:308-  393 A   TP-grasp fold, B domain                             1pk8G02      ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhh..eehhheeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeeee..--.....---.eeeee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: G:112-135Exon 1.6             Exon 1.7  PDB: G:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: G:229-263           Exon 1.10  PDB: G:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.8  PDB: G:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: G:342-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 G 112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSV--NWKTN---AMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   121       131       141       151       161    |    -   |   181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  |   |  -|      351       361       371       381       391       401       411      
                                                                                166      175                                                                                                                                                         331  | 338 342                                                                           
                                                                                                                                                                                                                                                        334

Chain H from PDB  Type:PROTEIN  Length:286
 aligned with SYN1_RAT | P09951 from UniProtKB/Swiss-Prot  Length:704

    Alignment length:306
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
             SYN1_RAT   112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
               SCOP domains d1pk8h1 H:112-213 Synapsin I                                                                          d1pk8h2 H:214-417 Synapsin                                                                                                                                                                                   SCOP domains
               CATH domains 1pk8H02 H:112-214,H:394-406  [code=3.40.50.20, no name         defined]                                1pk8H03 H:215-247,H:308-393      1pk8H01 H:248-307 ATP-grasp fold, A domain                  1pk8H03 H:215-247,H:30     8-       393 ATP-grasp fold, B domain                      1pk8H02      ----------- CATH domains
           Pfam domains (1) Synapsin-1pk8H09 H:112-212                                                                           -Synapsin_C-1pk8H01 H:214-416                                                                                                                                                                               - Pfam domains (1)
           Pfam domains (2) Synapsin-1pk8H10 H:112-212                                                                           -Synapsin_C-1pk8H02 H:214-416                                                                                                                                                                               - Pfam domains (2)
           Pfam domains (3) Synapsin-1pk8H11 H:112-212                                                                           -Synapsin_C-1pk8H03 H:214-416                                                                                                                                                                               - Pfam domains (3)
           Pfam domains (4) Synapsin-1pk8H12 H:112-212                                                                           -Synapsin_C-1pk8H04 H:214-416                                                                                                                                                                               - Pfam domains (4)
           Pfam domains (5) Synapsin-1pk8H13 H:112-212                                                                           -Synapsin_C-1pk8H05 H:214-416                                                                                                                                                                               - Pfam domains (5)
           Pfam domains (6) Synapsin-1pk8H14 H:112-212                                                                           -Synapsin_C-1pk8H06 H:214-416                                                                                                                                                                               - Pfam domains (6)
           Pfam domains (7) Synapsin-1pk8H15 H:112-212                                                                           -Synapsin_C-1pk8H07 H:214-416                                                                                                                                                                               - Pfam domains (7)
           Pfam domains (8) Synapsin-1pk8H16 H:112-212                                                                           -Synapsin_C-1pk8H08 H:214-416                                                                                                                                                                               - Pfam domains (8)
         Sec.struct. author ..eeeeee.....hhhhhhh..ee...eeeeeeeehhh.eeeeee....eeeee.--------.eee...eeee............hhhhhhhhhhh...ee.hhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.hhhhh.......eeeee........eeee.hhhhhhhhhhhhhhhh..eeeee...eeeeeeeeee..eeeeeee.-----..-------.eee..hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------SYNAPSIN_2 ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: H:112-135Exon 1.6             Exon 1.7  PDB: H:157-204 (gaps) UniProt: 157-204------------------------Exon 1.9  PDB: H:229-263           Exon 1.10  PDB: H:264-310 UniProt: 264-310     Exon 1.11 UniProt: 311-340    ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.8  PDB: H:204-229  --------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: H:344-417 UniProt: 340-537 [INCOMPLETE]                       Transcript 1 (2)
                 1pk8 H 112 AARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDME--------VRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRT-----WK-------LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQA 417
                                   121       131       141       151       161    |    -   |   181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       | -   ||    -  |    351       361       371       381       391       401       411      
                                                                                166      175                                                                                                                                                       329   335|     344                                                                         
                                                                                                                                                                                                                                                          336

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ATP-grasp (191)

Superfamily: Glutathione synthetase ATP-binding domain-like (158)

Family: Synapsin C-terminal domain (7)

Protein domain: Synapsin (4)

Norway rat (Rattus norvegicus) [TaxId: 10116] (2)

1a	d1pk8a2	A:214-417
1b	d1pk8b2	B:214-417
1c	d1pk8c2	C:214-417
1d	d1pk8d2	D:214-417
1e	d1pk8e2	E:214-416
1f	d1pk8f2	F:214-417
1g	d1pk8g2	G:214-417
1h	d1pk8h2	H:214-417

Class: Alpha and beta proteins (a/b) (23833)

Fold: PreATP-grasp domain (131)

Superfamily: PreATP-grasp domain (131)

Family: Synapsin domain (6)

Protein domain: Synapsin I (4)

Norway rat (Rattus norvegicus) [TaxId: 10116] (2)

2a	d1pk8a1	A:112-213
2b	d1pk8b1	B:113-213
2c	d1pk8c1	C:113-213
2d	d1pk8d1	D:112-213
2e	d1pk8e1	E:112-213
2f	d1pk8f1	F:113-213
2g	d1pk8g1	G:112-213
2h	d1pk8h1	H:112-213

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: D-amino Acid Aminotransferase; Chain A, domain 1 (175)

Homologous Superfamily: ATP-grasp fold, B domain (118)

Norway rat (Rattus norvegicus) (4)

1a	1pk8A03	A:215-247,A:308-393
1b	1pk8C03	C:215-247,C:308-393
1c	1pk8H03	H:215-247,H:308-393
1d	1pk8D03	D:215-247,D:308-393
1e	1pk8B03	B:215-247,B:308-393
1f	1pk8G03	G:215-247,G:308-393
1g	1pk8E03	E:215-247,E:308-393
1h	1pk8F03	F:215-247,F:308-393

Topology: Dna Ligase; domain 1 (375)

Homologous Superfamily: ATP-grasp fold, A domain (109)

Norway rat (Rattus norvegicus) (4)

2a	1pk8A01	A:248-307
2b	1pk8G01	G:248-307
2c	1pk8H01	H:248-307
2d	1pk8B01	B:248-307
2e	1pk8C01	C:248-307
2f	1pk8D01	D:248-307
2g	1pk8E01	E:248-307
2h	1pk8F01	F:248-307

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.20, no name defined] (85)

Norway rat (Rattus norvegicus) (4)

3a	1pk8B02	B:113-214,B:394-406
3b	1pk8C02	C:113-214,C:394-406
3c	1pk8F02	F:113-214,F:394-406
3d	1pk8E02	E:112-214,E:394-406
3e	1pk8G02	G:112-214,G:394-406
3f	1pk8H02	H:112-214,H:394-406
3g	1pk8D02	D:112-214,D:394-406
3h	1pk8A02	A:112-214,A:394-406

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ATP-grasp (83)

Family: Synapsin_C (3)

Rattus norvegicus (Rat) (2)

1a	Synapsin_C-1pk8H01	H:214-416
1b	Synapsin_C-1pk8H02	H:214-416
1c	Synapsin_C-1pk8H03	H:214-416
1d	Synapsin_C-1pk8H04	H:214-416
1e	Synapsin_C-1pk8H05	H:214-416
1f	Synapsin_C-1pk8H06	H:214-416
1g	Synapsin_C-1pk8H07	H:214-416
1h	Synapsin_C-1pk8H08	H:214-416

Clan: no clan defined [family: Synapsin] (3)

Family: Synapsin (3)

Rattus norvegicus (Rat) (2)

2a	Synapsin-1pk8H09	H:112-212
2b	Synapsin-1pk8H10	H:112-212
2c	Synapsin-1pk8H11	H:112-212
2d	Synapsin-1pk8H12	H:112-212
2e	Synapsin-1pk8H13	H:112-212
2f	Synapsin-1pk8H14	H:112-212
2g	Synapsin-1pk8H15	H:112-212
2h	Synapsin-1pk8H16	H:112-212

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (SYN1_RAT | P09951)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003779	actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
	GO:0048306	calcium-dependent protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019901	protein kinase binding	Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
	GO:0007269	neurotransmitter secretion	The regulated release of neurotransmitter from the presynapse into the synaptic cleft via calcium regualated exocytosis during synaptic transmission.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0030425	dendrite	A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
	GO:0043229	intracellular organelle	Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0014069	postsynaptic density of dendrite	An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
	GO:0048786	presynaptic active zone	A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix.
	GO:0045202	synapse	The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
	GO:0008021	synaptic vesicle	A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.
	GO:0030672	synaptic vesicle membrane	The lipid bilayer surrounding a synaptic vesicle.
	GO:0000795	synaptonemal complex	A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element.
	GO:0043195	terminal bouton	Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.

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1aux	BOVINE SYNAPSIN I C DOMAIN COMPLEXED TO CA.ATPGAMMAS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (16, 16)

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Exons (8, 64)

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