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(-) Description

Title :  CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE COMPLEXED WITH ITS REACTION PRODUCT 3,4-DIHYDROXYBENZOATE
 
Authors :  H. A. Schreuder, J. Drenth
Date :  04 Nov 87  (Deposition) - 16 Apr 88  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. A. Schreuder, J. M. Van Der Laan, W. G. Hol, J. Drenth
Crystal Structure Of P-Hydroxybenzoate Hydroxylase Complexe With Its Reaction Product 3, 4-Dihydroxybenzoate.
J. Mol. Biol. V. 199 637 1988
PubMed-ID: 3351945  |  Reference-DOI: 10.1016/0022-2836(88)90307-5
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - P-HYDROXYBENZOATE HYDROXYLASE
    ChainsA
    EC Number1.14.13.2
    EngineeredYES
    Organism ScientificPSEUDOMONAS FLUORESCENS
    Organism Taxid294

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1DHB1Ligand/Ion3,4-DIHYDROXYBENZOIC ACID
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1DHB2Ligand/Ion3,4-DIHYDROXYBENZOIC ACID
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:8 , GLY A:9 , GLY A:11 , SER A:13 , LEU A:31 , GLU A:32 , ARG A:33 , ARG A:42 , ARG A:44 , ALA A:45 , GLY A:46 , VAL A:47 , GLN A:102 , CYS A:158 , ASP A:159 , ILE A:164 , ASP A:286 , ALA A:296 , LYS A:297 , GLY A:298 , LEU A:299 , ASN A:300 , DHB A:396 , HOH A:401 , HOH A:441 , HOH A:480BINDING SITE FOR RESIDUE FAD A 395
2AC2SOFTWAREARG A:44 , TRP A:185 , LEU A:199 , TYR A:201 , LEU A:210 , SER A:212 , ARG A:214 , TYR A:222 , PRO A:293 , THR A:294 , FAD A:395BINDING SITE FOR RESIDUE DHB A 396

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PHH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:274 -Pro A:275

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PHH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PHH)

(-) Exons   (0, 0)

(no "Exon" information available for 1PHH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:394
 aligned with PHHY_PSEFL | P00438 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
           PHHY_PSEFL     1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 394
               SCOP domains d1phha1 A:1-173,A:276-394 p-Hydroxybenzoate hydroxylase, PHBH                                                                                                                d1phha2 A:174-275 p-Hydroxybenzoate hydroxylase (PHBH)                                                d1phha1 A:1-173,A:276-394 p-Hydroxybenzoate hydroxylase, PHBH                                                           SCOP domains
               CATH domains 1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]   1phhA02                1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]                1phhA02 A:73-95,A:181-268,A:352-388 D-Amino Acid Oxidase, subunit A, domain 2           1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]              1phhA02 A:73-95,A:181-268,A:352-388  ------ CATH domains
               Pfam domains -FAD_binding_3-1phhA01 A:2-343                                                                                                                                                                                                                                                                                                                         --------------------------------------------------- Pfam domains
         Sec.struct. author ee..eeee...hhhhhhhhhhhhh...eeee......hhhh.....eee...hhhhh.....hhhhhh.eee..eeeee...eee..hhhh.....eee..hhhhhhhhhhhhh.....ee...eeeeee.......eeeee....eeeee..eeee........hhh......eeeeee...eeeeeee........eeeeee..eeeeeeeee..eeeeeeee...........hhhhhhhhh..hhhhhhh......eee.....eeeeee..ee..eee.....ee........hhhhhhhhhhhhhhhhhhhh....hhh..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1phh A   1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (PHHY_PSEFL | P00438)
molecular function
    GO:0018659    4-hydroxybenzoate 3-monooxygenase activity    Catalysis of the reaction: 4-hydroxybenzoate + NADPH + H+ + O2 = protocatechuate + NADP+ + H2O.
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0043639    benzoate catabolic process    The chemical reactions and pathways resulting in the breakdown of benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid.
    GO:0043640    benzoate catabolic process via hydroxylation    The chemical reactions and pathways resulting in the breakdown of benzoate, by its hydroxylation to cis-1,2-dihydroxybenzoate followed by dehydrogenation to catechol.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHHY_PSEFL | P004381bf3 1bgj 1bgn 1bkw 1cc4 1cc6 1cj2 1cj3 1cj4 1pbb 1pbc 1pbd 1pbe 1pbf 1pdh 2phh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1PHH)