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(-) Description

Title :  SOLUTION STRUCTURE OF THE UBA DOMAIN IN SACCHAROMYCES CEREVISIAE PROTEIN, SWA2P
 
Authors :  N. Chim, W. E. Gall, J. Xiao, M. P. Harris, T. R. Graham, A. M. Krezel
Date :  28 May 03  (Deposition) - 23 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Uba, Ubiquitin, Swa2, Auxilin, Ubiquitin-Associated Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Chim, W. E. Gall, J. Xiao, M. P. Harris, T. R. Graham, A. M. Krezel
Solution Structure Of The Ubiquitin-Binding Domain In Swa2P From Saccharomyces Cerevisiae.
Proteins: V. 54 784 2004 Struct. , Funct. , Genet.
PubMed-ID: 14997574  |  Reference-DOI: 10.1002/PROT.10636
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SWA2P
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET32-EKLIC
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUBIQUITIN-ASSOCIATED (UBA) DOMAIN
    GeneSWA2
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    SynonymAUXILIN-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PGY)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YDR320C1YDR320C.1IV:1108099-11060932007SWA2_YEAST1-6686681A:1-4747

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:47
 aligned with SWA2_YEAST | Q06677 from UniProtKB/Swiss-Prot  Length:668

    Alignment length:47
                                   146       156       166       176       
           SWA2_YEAST   137 ALVDEVKDMEIARLMSLGLSIEEATEFYENDVTYERYLEILKSKQKE 183
               SCOP domains d1pgya_ A: Auxilin-like protein Swa2p           SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains -Ubiq-assoc-1pgyA01 A:2-47                      Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:1-47 UniProt: 1-668            Transcript 1
                 1pgy A   1 ALVDEVKDMEIARLMSLGLSIEEATEFYENDVTYERYLEILKSKQKE  47
                                    10        20        30        40       

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1PGY)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (SWA2_YEAST | Q06677)
molecular function
    GO:0030276    clathrin binding    Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
    GO:0043130    ubiquitin binding    Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
biological process
    GO:0072318    clathrin coat disassembly    The disaggregation of a clathrin coat into its constituent components; results in stripping or removing the clathrin coat from clathrin-coated vesicles (CCV) before fusing with their targets. CVVs transport cargo from plasma membrane and trans-Golgi to the endosomal system.
    GO:0048309    endoplasmic reticulum inheritance    The partitioning of endoplasmic reticulum between daughter cells at cell division.
    GO:0032781    positive regulation of ATPase activity    Any process that activates or increases the rate of ATP hydrolysis by an ATPase.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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