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(-) Description

Title :  HUMAN TRANSCRIPTIONAL COACTIVATOR PC4 C-TERMINAL DOMAIN
 
Authors :  J. Brandsen, P. Gros
Date :  09 Sep 97  (Deposition) - 18 Mar 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Transcription, Transcriptional Cofactor, Transcriptional Co- Activator, Ssdna Binding, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Brandsen, S. Werten, P. C. Van Der Vliet, M. Meisterernst, J. Kroon, P. Gros
C-Terminal Domain Of Transcription Cofactor Pc4 Reveals Dimeric Ssdna Binding Site.
Nat. Struct. Biol. V. 4 900 1997
PubMed-ID: 9360603  |  Reference-DOI: 10.1038/NSB1197-900
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL COACTIVATOR PC4
    Cell Line: BL21
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BL21
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-11A
    Fragment: C-TERMINAL DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P15

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PCF)

(-) Sites  (0, 0)

(no "Site" information available for 1PCF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PCF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PCF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PCF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PCF)

(-) Exons   (3, 24)

Asymmetric Unit (3, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4aENST000002650734aENSE00001164444chr5:32585605-32585731127TCP4_HUMAN-00--
1.6aENST000002650736aENSE00002195559chr5:32588618-3258869073TCP4_HUMAN1-24240--
1.7bENST000002650737bENSE00001164441chr5:32591669-32591791123TCP4_HUMAN25-65418A:62-65
B:62-65
C:62-65
D:62-65
E:62-65
F:62-65
G:62-65
H:62-65		4
4
4
4
4
4
4
4
1.9bENST000002650739bENSE00001200257chr5:32599067-32599175109TCP4_HUMAN66-102378A:66-102
B:66-102
C:66-102
D:66-102
E:66-102
F:66-102
G:66-102
H:66-102		37
37
37
37
37
37
37
37
1.10kENST0000026507310kENSE00001563086chr5:32601111-326041853075TCP4_HUMAN102-127268A:102-127
B:102-127
C:102-127
D:102-127
E:102-127
F:102-127
G:102-127
H:102-127		26
26
26
26
26
26
26
26

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfa_ A: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfA00 A:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: A:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: A:66-102             ------------------------- Transcript 1 (2)
                 1pcf A  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain B from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfb_ B: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfB00 B:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: B:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: B:66-102             ------------------------- Transcript 1 (2)
                 1pcf B  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain C from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfc_ C: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfC00 C:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: C:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: C:66-102             ------------------------- Transcript 1 (2)
                 1pcf C  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain D from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfd_ D: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfD00 D:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: D:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: D:66-102             ------------------------- Transcript 1 (2)
                 1pcf D  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain E from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfe_ E: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfE00 E:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: E:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: E:66-102             ------------------------- Transcript 1 (2)
                 1pcf E  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain F from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcff_ F: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfF00 F:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: F:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: F:66-102             ------------------------- Transcript 1 (2)
                 1pcf F  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain G from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfg_ G: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfG00 G:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: G:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: G:66-102             ------------------------- Transcript 1 (2)
                 1pcf G  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain H from PDB  Type:PROTEIN  Length:66
 aligned with TCP4_HUMAN | P53999 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:66
                                    71        81        91       101       111       121      
           TCP4_HUMAN    62 NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
               SCOP domains d1pcfh_ H: Transcriptional coactivator PC4 C-terminal domain       SCOP domains
               CATH domains 1pcfH00 H:62-127 Transcriptional Coactivator Pc4; Chain A          CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eee..eeeee.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.7b------------------------------------Exon 1.10k  PDB: H:102-127 Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.9b  PDB: H:66-102             ------------------------- Transcript 1 (2)
                 1pcf H  62 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1PCF)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (TCP4_HUMAN | P53999)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
    GO:0001205    transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in a distal enhancer region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
biological process
    GO:0060395    SMAD protein signal transduction    The cascade of processes by which a signal interacts with a receptor, causing a change in the activity of a SMAD protein, and ultimately effecting a change in the functioning of the cell.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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  TCP4_HUMAN | P53999
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCP4_HUMAN | P53999: 2c62 2phe 4usg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1PCF)