1OYX - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM

Authors :   W. K. Wang, V. Tereshko, P. Boccuni, D. Macgrogan, S. D. Nimer, D. J. Patel

Date :   07 Apr 03 (Deposition) - 19 Aug 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (3x)

Keywords :   Propeller, Transcription Repressor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. K. Wang, V. Tereshko, P. Boccuni, D. Macgrogan, S. D. Nimer, D. J. Patel
Malignant Brain Tumor Repeats: A Three-Leaved Propeller Architecture With Ligand/Peptide Binding Pockets.
Structure V. 11 775 2003
PubMed-ID: 12842041 | Reference-DOI: 10.1016/S0969-2126(03)00127-8
(for further references see the PDB file header)

Molecule 1 - LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-4T-3
	Expression System Strain	:	BL21-DE(3)RP
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 197-527
	Gene	:	L3MBTL OR L3MBT OR KIAA0681
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	L3, MBT-LIKE, L3, MBT PROTEIN HOMOLOG, H-L3, MBT PROTEIN, H-L3, MBT
	Tissue	:	BRAIN

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (3x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 36)

No.	Name	Count	Type	Full Name
1	MES	7	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 108)

No.	Name	Count	Type	Full Name
1	MES	21	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	MSE	45	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	42	Ligand/Ion	SULFATE ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR B:275 , SER B:276 , HIS B:279 , LYS B:307	BINDING SITE FOR RESIDUE SO4 B 2001
02	AC2	SOFTWARE	PRO A:446 , TYR C:275 , SER C:276 , HIS C:279 , LYS C:307	BINDING SITE FOR RESIDUE SO4 C 2002
03	AC3	SOFTWARE	ARG C:356 , TRP C:389 , CYS C:390 , SER C:394 , TYR C:396 , ARG C:444 , ASP C:495	BINDING SITE FOR RESIDUE SO4 C 2003
04	AC4	SOFTWARE	HIS B:482 , ASP B:484 , GLY B:485	BINDING SITE FOR RESIDUE SO4 B 2004
05	AC5	SOFTWARE	HIS A:482 , GLY A:485	BINDING SITE FOR RESIDUE SO4 A 2005
06	AC6	SOFTWARE	LYS C:235 , SER C:315 , TRP C:316 , SER C:317	BINDING SITE FOR RESIDUE SO4 C 2006
07	AC7	SOFTWARE	LYS C:298 , LYS C:330 , HIS C:338	BINDING SITE FOR RESIDUE SO4 C 2007
08	AC8	SOFTWARE	LYS A:235 , GLU A:297 , SER A:315 , TRP A:316 , SER A:317	BINDING SITE FOR RESIDUE SO4 A 2008
09	AC9	SOFTWARE	LYS A:442 , SER B:487 , HIS B:488	BINDING SITE FOR RESIDUE SO4 B 2009
10	BC1	SOFTWARE	PRO A:329 , LYS A:330 , HIS A:331	BINDING SITE FOR RESIDUE SO4 A 2010
11	BC2	SOFTWARE	ARG B:460 , HIS B:498 , HOH B:2027 , HOH B:2106 , HOH B:2152	BINDING SITE FOR RESIDUE SO4 B 2011
12	BC3	SOFTWARE	ARG A:460 , HIS A:498	BINDING SITE FOR RESIDUE SO4 A 2012
13	BC4	SOFTWARE	TYR A:490 , HOH A:2097 , PRO B:221 , VAL B:222 , HOH B:2210	BINDING SITE FOR RESIDUE SO4 B 2013
14	BC5	SOFTWARE	LYS B:235 , SER B:315 , TRP B:316 , SER B:317 , HOH B:2142	BINDING SITE FOR RESIDUE SO4 B 2014
15	BC6	SOFTWARE	PHE A:256 , PHE A:272 , TYR A:275 , SER A:276 , HIS A:279 , LYS A:307	BINDING SITE FOR RESIDUE MES A 1011
16	BC7	SOFTWARE	ASP A:355 , ASN A:358 , CYS A:363 , PHE A:379 , TRP A:382 , TYR A:386	BINDING SITE FOR RESIDUE MES A 1012
17	BC8	SOFTWARE	PHE B:256 , PHE B:272 , HIS B:279	BINDING SITE FOR RESIDUE MES B 1021
18	BC9	SOFTWARE	ASP B:355 , ASN B:358 , CYS B:363 , PHE B:379 , TRP B:382 , TYR B:386 , HOH C:2180	BINDING SITE FOR RESIDUE MES B 1022
19	CC1	SOFTWARE	ASP B:459 , ARG B:461 , PHE B:483 , TRP B:486	BINDING SITE FOR RESIDUE MES B 1023
20	CC2	SOFTWARE	PHE C:256 , TYR C:275 , HIS C:279	BINDING SITE FOR RESIDUE MES C 1031
21	CC3	SOFTWARE	ASP C:355 , ASN C:358 , PHE C:379 , TRP C:382 , TYR C:386	BINDING SITE FOR RESIDUE MES C 1032

(no "SS Bond" information available for 1OYX)

(no "Cis Peptide Bond" information available for 1OYX)

Asymmetric Unit (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051098	I	479	M	LMBL1_HUMAN	Polymorphism	6017104	A/B/C	I	479	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051098	I	479	M	LMBL1_HUMAN	Polymorphism	6017104	A/B/C	I	479	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MBT	PS51079	MBT repeat profile.	LMBL1_HUMAN	206-306 314-413 422-517	9	A:206-306 B:206-306 C:206-306 A:314-413 B:314-413 C:314-413 A:422-517 B:422-517 C:422-517

Biological Unit 1 (1, 27)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MBT	PS51079	MBT repeat profile.	LMBL1_HUMAN	206-306 314-413 422-517	27	A:206-306 B:206-306 C:206-306 A:314-413 B:314-413 C:314-413 A:422-517 B:422-517 C:422-517

(no "Exon" information available for 1OYX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:313
 aligned with LMBL1_HUMAN | Q9Y468 from UniProtKB/Swiss-Prot  Length:752

    Alignment length:313
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
          LMBL1_HUMAN   206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
               SCOP domains d1oyxa1 A:206-313 Lethal(3)malignant brain tumor-like protein                                               d1oyxa2 A:314-421 Lethal(3)malignant brain tumor-like protein                                               d1oyxa3 A:422-518 Lethal(3)malignant brain tumor-like protein                                     SCOP domains
               CATH domains 1oyxA01 A:206-234,A:447-518  1oyxA02 A:235-338  [code=2.30.30.160, no name defined]                                                  1oyxA03 A:339-446  [code=2.30.30.160, no name defined]                                                      1oyxA01 A:206-234,A:447-518  [code=2.30.30.160, no name defined]         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhhhhhhhh...........eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh..ee.....hhhhhhhhhhhhhhh....hhhhh................eeeee.......eeeeee.......eeeee...hhhhheee......ee..hhhhhhh...............hhhhhhhhh.....hhhhh............eeeee.......eeeeeeeee...eeeeee...hhhhheeee.....ee..hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------------------------------- SAPs(SNPs)
                    PROSITE MBT  PDB: A:206-306 UniProt: 206-306                                                                 -------MBT  PDB: A:314-413 UniProt: 314-413                                                                --------MBT  PDB: A:422-517 UniProt: 422-517                                                            - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oyx A 206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGmKLEGIDPQHPSmYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGmKLEAVDRmNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNmKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
                                   215       225       235      |245       255       265       275       285       295       305       315       325       335       345   |   355 |     365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
                                                              242-MSE     254-MSE                                                                                        349-MSE 357-MSE                                                                                         453-MSE

Chain B from PDB  Type:PROTEIN  Length:313
 aligned with LMBL1_HUMAN | Q9Y468 from UniProtKB/Swiss-Prot  Length:752

    Alignment length:313
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
          LMBL1_HUMAN   206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
               SCOP domains d1oyxb1 B:206-313 Lethal(3)malignant brain tumor-like protein                                               d1oyxb2 B:314-421 Lethal(3)malignant brain tumor-like protein                                               d1oyxb3 B:422-518 Lethal(3)malignant brain tumor-like protein                                     SCOP domains
               CATH domains 1oyxB01 B:206-234,B:447-518  1oyxB02 B:235-338  [code=2.30.30.160, no name defined]                                                  1oyxB03 B:339-446  [code=2.30.30.160, no name defined]                                                      1oyxB01 B:206-234,B:447-518  [code=2.30.30.160, no name defined]         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhhhhhhhh...........eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh..ee..........hhhhhhhhhh....hhhhh................eeeee.......eeeeeeeeee..eeeeee...hhhhheee......ee..hhhhhhh..ee...........hhhhhhhhhh....hhhhh............eeeee.......eeeeeeeee...eeeeee...hhhhheeee.....ee..hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------------------------------- SAPs(SNPs)
                    PROSITE MBT  PDB: B:206-306 UniProt: 206-306                                                                 -------MBT  PDB: B:314-413 UniProt: 314-413                                                                --------MBT  PDB: B:422-517 UniProt: 422-517                                                            - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oyx B 206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGmKLEGIDPQHPSmYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGmKLEAVDRmNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNmKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
                                   215       225       235      |245       255       265       275       285       295       305       315       325       335       345   |   355 |     365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
                                                              242-MSE     254-MSE                                                                                        349-MSE 357-MSE                                                                                         453-MSE

Chain C from PDB  Type:PROTEIN  Length:313
 aligned with LMBL1_HUMAN | Q9Y468 from UniProtKB/Swiss-Prot  Length:752

    Alignment length:313
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
          LMBL1_HUMAN   206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
               SCOP domains d1oyxc1 C:206-313 Lethal(3)malignant brain tumor-like protein                                               d1oyxc2 C:314-421 Lethal(3)malignant brain tumor-like protein                                               d1oyxc3 C:422-518 Lethal(3)malignant brain tumor-like protein                                     SCOP domains
               CATH domains 1oyxC01 C:206-234,C:447-518  1oyxC02 C:235-338  [code=2.30.30.160, no name defined]                                                  1oyxC03 C:339-446  [code=2.30.30.160, no name defined]                                                      1oyxC01 C:206-234,C:447-518  [code=2.30.30.160, no name defined]         CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC01 C:453-518                                              Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC02 C:453-518                                              Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC03 C:453-518                                              Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC04 C:453-518                                              Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC05 C:453-518                                              Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC06 C:453-518                                              Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC07 C:453-518                                              Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC08 C:453-518                                              Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MBT-1oyxC09 C:453-518                                              Pfam domains (9)
         Sec.struct. author .hhhhhhhhh.....hhhhhhhhhhh...........eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh..ee..........hhhhhhhhhh....hhhhh................eeeee.......eeeeeeeeee..eeeeee........eee......ee..hhhhhhh..ee......hhhhhhhhhhhhhhh....hhhhh............eeeee.......eeeeeeeee...eeeeee...hhhhheeee.....ee..hhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------------------------------- SAPs(SNPs)
                    PROSITE MBT  PDB: C:206-306 UniProt: 206-306                                                                 -------MBT  PDB: C:314-413 UniProt: 314-413                                                                --------MBT  PDB: C:422-517 UniProt: 422-517                                                            - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oyx C 206 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGmKLEGIDPQHPSmYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGmKLEAVDRmNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNmKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPL 518
                                   215       225       235      |245       255       265       275       285       295       305       315       325       335       345   |   355 |     365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515   
                                                              242-MSE     254-MSE                                                                                        349-MSE 357-MSE                                                                                         453-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: SH3-like barrel (1035)

Superfamily: Tudor/PWWP/MBT (72)

Family: MBT repeat (8)

Protein domain: Lethal(3)malignant brain tumor-like protein (3)

Human (Homo sapiens) [TaxId: 9606] (3)

1a	d1oyxa1	A:206-313
1b	d1oyxa2	A:314-421
1c	d1oyxa3	A:422-518
1d	d1oyxb1	B:206-313
1e	d1oyxb2	B:314-421
1f	d1oyxb3	B:422-518
1g	d1oyxc1	C:206-313
1h	d1oyxc2	C:314-421
1i	d1oyxc3	C:422-518

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: SH3 type barrels. (648)

Homologous Superfamily: [code=2.30.30.160, no name defined] (35)

Human (Homo sapiens) (27)

1a	1oyxA02	A:235-338
1b	1oyxA03	A:339-446
1c	1oyxB03	B:339-446
1d	1oyxC03	C:339-446
1e	1oyxB02	B:235-338
1f	1oyxC02	C:235-338
1g	1oyxA01	A:206-234,A:447-518
1h	1oyxB01	B:206-234,B:447-518
1i	1oyxC01	C:206-234,C:447-518

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Tudor (88)

Family: MBT (24)

Homo sapiens (Human) (20)

1a	MBT-1oyxC01	C:453-518
1b	MBT-1oyxC02	C:453-518
1c	MBT-1oyxC03	C:453-518
1d	MBT-1oyxC04	C:453-518
1e	MBT-1oyxC05	C:453-518
1f	MBT-1oyxC06	C:453-518
1g	MBT-1oyxC07	C:453-518
1h	MBT-1oyxC08	C:453-518
1i	MBT-1oyxC09	C:453-518

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (LMBL1_HUMAN | Q9Y468)

molecular function
	GO:0032093	SAM domain binding	Interacting selectively and non-covalently with a SAM (Sterile Alpha Motif) domain, which is a 70-amino acid protein sequence that participates in protein-protein, protein-lipid, and protein-RNA interactions and is conserved from lower to higher eukaryotes.
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0042393	histone binding	Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0035064	methylated histone binding	Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
	GO:0031493	nucleosomal histone binding	Interacting selectively and non-covalently with a histone that is assembled into a nucleosome.
	GO:0031491	nucleosome binding	Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0030097	hemopoiesis	The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0051726	regulation of cell cycle	Any process that modulates the rate or extent of progression through the cell cycle.
	GO:0045652	regulation of megakaryocyte differentiation	Any process that modulates the frequency, rate or extent of megakaryocyte differentiation.
	GO:0007088	regulation of mitotic nuclear division	Any process that modulates the frequency, rate or extent of mitosis.
	GO:1901796	regulation of signal transduction by p53 class mediator	Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0000785	chromatin	The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
	GO:0000793	condensed chromosome	A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
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	1oyx
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1oz2	CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (NATIVE-II) AT 1.55 ANGSTROM
1oz3	CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (NATIVE-I) AT 1.85 ANGSTROM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 36)

Sites (21, 21)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 3)

PROSITE Motifs (1, 9)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 9)

CATH Domains (1, 9)

Pfam Domains (1, 9)

Gene Ontology (25, 25)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File