1OY1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   X-RAY STRUCTURE OF ELBB FROM E. COLI. NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER105

Authors :   J. Benach, W. Edstrom, L. C. Ma, R. Xiao, T. B. Acton, B. Rost, G. T. Montel J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)

Date :   03 Apr 03 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.95

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Er105, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Benach, W. Edstrom, L. C. Ma, R. Xiao, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt
X-Ray Structure Of Elbb From E. Coli. Northeast Structural Genomics Research Consortium (Nesg) Target Er105
To Be Published
PubMed: search

Molecule 1 - PUTATIVE SIGMA CROSS-REACTING PROTEIN 27A
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ELBB
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K12
	Synonym	:	SCRP-27A, PUTATIVE ENHANCING LYCOPENE BIOSYNTHESIS PROTEIN 2

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 28)

No.	Name	Count	Type	Full Name
1	MSE	28	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 14)

No.	Name	Count	Type	Full Name
1	MSE	14	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 14)

No.	Name	Count	Type	Full Name
1	MSE	14	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1OY1)

(no "SS Bond" information available for 1OY1)

(no "Cis Peptide Bond" information available for 1OY1)

(no "SAP(SNP)/Variant" information available for 1OY1)

(no "PROSITE Motif" information available for 1OY1)

(no "Exon" information available for 1OY1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:221
 aligned with ELBB_ECOLI | P0ABU5 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:221
                                                                                                                                                                                                                                                  217    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      |  - 
           ELBB_ECOLI     1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE----   -
               SCOP domains d1oy1a_ A: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)                                                                                                                                                         SCOP domains
               CATH domains -1oy1A00 A:5-224  [code=3.40.50.880, no name defined]                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..........hhhhhhhhhhhhhhh..eeeeee.....................hhhhhhhhhh....ee.hhhhhhhh.eeee..hhhhh....hhhhhhhhh..hhhhhhhhhhhhh....eeee.hhhhhhhhhh....ee....hhhhhhhhhh...ee........eee....eeee.......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oy1 A   4 mKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAmTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAmHQAGKPLGFmCIAPAmLPKIFDFPLRLTIGTDIDTAEVLEEmGAEHVPCPVDDIVVDEDNKIVTTPAYmLAQNIAEAASGIDKLVSRVLVLAELEHH 224
                            |       13        23        33        43        53      | 63        73        83        93       103       113       123   |   133   |   143       153       163     | 173       183       193  |    203       213       223 
                            |                                                      60-MSE                                                            127-MSE   137-MSE |                       169-MSE                    196-MSE                        
                            4-MSE                                                                                                                                    143-MSE

Chain B from PDB  Type:PROTEIN  Length:219
 aligned with ELBB_ECOLI | P0ABU5 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:219
                             1                                                                                                                                                                                                                     217 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       | 
           ELBB_ECOLI     - -MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE-   -
               SCOP domains d1oy1b_ B: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)                                                                                                                                                       SCOP domains
               CATH domains 1oy1B00 B:3-221  [code=3.40.50.880, no name defined]                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........hhhhhhhhhhhhhhh..eeeeee.....................hhhhhhhhhh....ee.hhhhhhhh.eeee..hhhhh....hhhhhhhhh..hhhhhhhhhhhhhh...eeee.hhhhhhhhhh....ee....hhhhhhhhhh...ee........eee....eeee.......hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oy1 B   3 TmKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAmTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAmHQAGKPLGFmCIAPAmLPKIFDFPLRLTIGTDIDTAEVLEEmGAEHVPCPVDDIVVDEDNKIVTTPAYmLAQNIAEAASGIDKLVSRVLVLAEL 221
                             |      12        22        32        42        52       |62        72        82        92       102       112       122    |  132    |  142|      152       162      |172       182       192   |   202       212         
                             4-MSE                                                  60-MSE                                                            127-MSE   137-MSE |                       169-MSE                    196-MSE                     
                                                                                                                                                                      143-MSE

Chain C from PDB  Type:PROTEIN  Length:217
 aligned with ELBB_ECOLI | P0ABU5 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       
           ELBB_ECOLI     1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE 217
               SCOP domains d1oy1c_ C: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)                                                                                                                                                     SCOP domains
               CATH domains -1oy1C00 C:5-220  [code=3.40.50.880, no name defined]                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..........hhhhhhhhhhhhhhh..eeeeee.....................hhhhhhhhhh....ee.hhhhhhhh.eeee..hhhhh....hhhhhhhhh..hhhhhhhhhhhhhh...eeee.hhhhhhhhhh....ee....hhhhhhhhhh...ee........eee....eeee.......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oy1 C   4 mKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAmTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAmHQAGKPLGFmCIAPAmLPKIFDFPLRLTIGTDIDTAEVLEEmGAEHVPCPVDDIVVDEDNKIVTTPAYmLAQNIAEAASGIDKLVSRVLVLAE 220
                            |       13        23        33        43        53      | 63        73        83        93       103       113       123   |   133   |   143       153       163     | 173       183       193  |    203       213       
                            4-MSE                                                  60-MSE                                                            127-MSE   137-MSE |                       169-MSE                    196-MSE                    
                                                                                                                                                                     143-MSE

Chain D from PDB  Type:PROTEIN  Length:217
 aligned with ELBB_ECOLI | P0ABU5 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:217
                             1                                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       
           ELBB_ECOLI     - -MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLA 216
               SCOP domains d1oy1d_ D: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)                                                                                                                                                     SCOP domains
               CATH domains 1oy1D00 D:3-219  [code=3.40.50.880, no name defined]                                                                                                                                                                      CATH domains
           Pfam domains (1) ---------------------------------------------DJ-1_PfpI-1oy1D01 D:48-206                                                                                                                                     ------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------DJ-1_PfpI-1oy1D02 D:48-206                                                                                                                                     ------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------DJ-1_PfpI-1oy1D03 D:48-206                                                                                                                                     ------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------DJ-1_PfpI-1oy1D04 D:48-206                                                                                                                                     ------------- Pfam domains (4)
         Sec.struct. author ...eeeee..........hhhhhhhhhhhhhhh..eeeeee.....................hhhhhhhhhh....ee.hhhhhhhh.eeee..hhhhh....hhhhhhhhh..hhhhhhhhhhhhhh...eeee.hhhhhhhhhh....ee....hhhhhhhhhh...ee........eee....eeee.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oy1 D   3 TmKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAmTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAmHQAGKPLGFmCIAPAmLPKIFDFPLRLTIGTDIDTAEVLEEmGAEHVPCPVDDIVVDEDNKIVTTPAYmLAQNIAEAASGIDKLVSRVLVLA 219
                             |      12        22        32        42        52       |62        72        82        92       102       112       122    |  132    |  142|      152       162      |172       182       192   |   202       212       
                             4-MSE                                                  60-MSE                                                            127-MSE   137-MSE |                       169-MSE                    196-MSE                   
                                                                                                                                                                      143-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Class I glutamine amidotransferase-like (173)

Family: DJ-1/PfpI (54)

Protein domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) (2)

Escherichia coli [TaxId: 562] (2)

1a	d1oy1a_	A:
1b	d1oy1b_	B:
1c	d1oy1c_	C:
1d	d1oy1d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.880, no name defined] (97)

Escherichia coli k12. Organism_taxid: 83333. Strain: k12. (2)

1a	1oy1B00	B:3-221
1b	1oy1C00	C:5-220
1c	1oy1D00	D:3-219
1d	1oy1A00	A:5-224

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Glutaminase_I (73)

Family: DJ-1_PfpI (29)

Escherichia coli (strain K12) (5)

1a	DJ-1_PfpI-1oy1D01	D:48-206
1b	DJ-1_PfpI-1oy1D02	D:48-206
1c	DJ-1_PfpI-1oy1D03	D:48-206
1d	DJ-1_PfpI-1oy1D04	D:48-206

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ELBB_ECOLI | P0ABU5)

molecular function
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
	GO:0045828	positive regulation of isoprenoid metabolic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving isoprenoid.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
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	1oy1
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(no "Related Entries Specified in the PDB File" available for 1OY1)

Description

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Ligands, Modified Residues, Ions (1, 28)

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SS Bonds (0, 0)

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