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(-) Description

Title :  A THREE DIMENSIONAL MODEL FOR BOVINE INTERFERON-TAU
 
Authors :  T. Senda, S. Saitoh, Y. Mitsui
Date :  08 Jun 95  (Deposition) - 15 Sep 95  (Release) - 15 Sep 95  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Cytokine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Senda, S. I. Saitoh, Y. Mitsui, J. Li, R. M. Roberts
A Three-Dimensional Model Of Interferon-Tau.
J. Interferon Cytokine Res. V. 15 1053 1995
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OVINE INTERFERON TAU
    ChainsA
    Organism CommonSHEEP
    Organism ScientificOVIS SP.
    SynonymOVIFN-TAU
    TissueEMBRYONIC TROPHOBLAST

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OVI)

(-) Sites  (0, 0)

(no "Site" information available for 1OVI)

(-) SS Bonds  (2, 2)

Theoretical Model
No.Residues
1A:1 -A:99
2A:29 -A:139

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OVI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OVI)

(-) PROSITE Motifs  (1, 1)

Theoretical Model (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INTERFERON_A_B_DPS00252 Interferon alpha, beta and delta family signature.IFNTB_SHEEP146-164  1A:123-141

(-) Exons   (0, 0)

(no "Exon" information available for 1OVI)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:162
 aligned with IFNTB_SHEEP | P28169 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:162
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183  
          IFNTB_SHEEP    24 CYLSQRLMLDARENLRLLDRMNRLSPHSCLQDRKDFGLPQEMVEGDQLQEAQAFCVLYEMLQQSFNLFHTERSSAAWNTTLLEQLCTGLQQQLEDLDTCRGPVMGEKDSELGKMDPIVTVKKYFQGIHFYLKEKEYSDCAWEIVRVEMMRALSSSTSLQERL 185
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------INTERFERON_A_B_D   --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ovi A   1 CYLSQRLMLDARENLRLLDRMNRLSPHSCLQDRKDFGLPQEMVEGDQLQEAQAFCVLYEMLQQSFNLFHTERSSAAWNTTLLEQLCTGLQQQLEDLDTCRGPVMGEKDSELGKMDPIVTVKKYFQGIHFYLKEKEYSDCAWEIVRVEMMRALSSSTSLQERL 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1OVI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1OVI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OVI)

(-) Gene Ontology  (8, 8)

Theoretical Model(hide GO term definitions)
Chain A   (IFNTB_SHEEP | P28169)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0005126    cytokine receptor binding    Interacting selectively and non-covalently with a cytokine receptor.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0051607    defense response to virus    Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
    GO:0007565    female pregnancy    The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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