1ONI - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A HUMAN P14.5, A TRANSLATIONAL INHIBITOR REVEALS DIFFERENT MODE OF LIGAND BINDING NEAR THE INVARIANT RESIDUES OF THE YJGF/UK114 PROTEIN FAMILY

Authors :   B. A. Manjasetty, H. Delbrueck, U. Mueller, M. F. Erdmann, U. Heinemann

Date :   28 Feb 03 (Deposition) - 08 Apr 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: G,H,I  (1x)

Keywords :   Yjgf/Yer057C/Uk114 Family, Trichloroacetic Acid Soluble Protein, Translational Inhibitor, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. A. Manjasetty, H. Delbruck, D. T. Pham, U. Mueller, M. Fieber-Erdmann, C. Scheich, V. Sievert, K. Bussow, F. H. Niesen, W. Weihofen, B. Loll, W. Saenger, U. Heinemann, F. H. Neisen
Crystal Structure Of Homo Sapiens Protein Hp14. 5.
Proteins V. 54 797 2004
PubMed-ID: 14997576 | Reference-DOI: 10.1002/PROT.10619

Molecule 1 - 14.5 KDA TRANSLATIONAL INHIBITOR PROTEIN
	Chains	:	A, B, C, D, E, F, G, H, I
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PSFEP758H0822
	Expression System Strain	:	SCS1
	Expression System Taxid	:	562
	Expression System Vector	:	PQTEV
	Fragment	:	TRANSLATIONAL INHIBITOR
	Gene	:	PSP
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	PROTEIN STRUCTURE FACTORY CLONE ID 104124
	Synonym	:	P14.5, UK114 ANTIGEN HOMOLOG

		1	2	3	4	5	6	7	8	9
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:							G	H	I

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 13)

No.	Name	Count	Type	Full Name
1	BEZ	13	Ligand/Ion	BENZOIC ACID

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	BEZ	5	Ligand/Ion	BENZOIC ACID

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	BEZ	4	Ligand/Ion	BENZOIC ACID

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	BEZ	4	Ligand/Ion	BENZOIC ACID

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:89 , ARG A:107 , ALA A:109 , BEZ A:502 , HOH A:525 , TYR B:21 , GLY B:35 , GLU B:122	BINDING SITE FOR RESIDUE BEZ A 501
02	AC2	SOFTWARE	PHE A:89 , ASN A:90 , ASN A:93 , ARG A:107 , BEZ A:501 , ILE B:18 , GLY B:19	BINDING SITE FOR RESIDUE BEZ A 502
03	AC3	SOFTWARE	ARG B:107 , ALA B:109 , BEZ B:504 , HOH B:546 , HOH B:560 , TYR C:21 , GLY C:35	BINDING SITE FOR RESIDUE BEZ B 503
04	AC4	SOFTWARE	ILE B:86 , PHE B:89 , BEZ B:503 , HOH B:508 , PRO C:116 , LYS C:117	BINDING SITE FOR RESIDUE BEZ B 504
05	AC5	SOFTWARE	TYR A:21 , GLY A:35 , PHE C:89 , ARG C:107	BINDING SITE FOR RESIDUE BEZ C 505
06	AC6	SOFTWARE	PHE D:89 , ARG D:107 , ALA D:109 , BEZ D:508 , ILE F:18 , TYR F:21 , GLY F:35 , GLU F:122	BINDING SITE FOR RESIDUE BEZ D 507
07	AC7	SOFTWARE	PHE D:89 , ASN D:90 , ASN D:93 , ARG D:107 , BEZ D:507 , GLY F:19	BINDING SITE FOR RESIDUE BEZ D 508
08	AC8	SOFTWARE	TYR D:21 , GLY D:35 , PHE E:89 , ARG E:107 , HOH E:525 , HOH E:542	BINDING SITE FOR RESIDUE BEZ E 509
09	AC9	SOFTWARE	TYR E:21 , GLY E:35 , GLU E:122 , PHE F:89 , ARG F:107 , ALA F:109 , HOH F:538 , HOH F:565	BINDING SITE FOR RESIDUE BEZ F 511
10	BC1	SOFTWARE	PHE G:89 , ARG G:107 , HOH G:522 , GLY H:35	BINDING SITE FOR RESIDUE BEZ G 513
11	BC2	SOFTWARE	PHE H:89 , ARG H:107 , GLY I:35 , ILE I:37 , HOH I:545	BINDING SITE FOR RESIDUE BEZ H 515
12	BC3	SOFTWARE	TYR G:21 , GLY G:35 , GLU G:122 , PHE I:89 , ARG I:107 , ALA I:109 , BEZ I:518 , HOH I:540	BINDING SITE FOR RESIDUE BEZ I 517
13	BC4	SOFTWARE	ILE G:18 , GLY G:19 , PHE I:89 , ASN I:90 , ASN I:93 , ARG I:107 , BEZ I:517	BINDING SITE FOR RESIDUE BEZ I 518

(no "SS Bond" information available for 1ONI)

Asymmetric Unit

No.	Residues
1	Gly A:130	-	Pro A:131
2	Gly B:130	-	Pro B:131
3	Gly C:130	-	Pro C:131
4	Gly D:130	-	Pro D:131
5	Gly E:130	-	Pro E:131
6	Gly F:130	-	Pro F:131
7	Gly G:130	-	Pro G:131
8	Gly H:130	-	Pro H:131
9	Gly I:130	-	Pro I:131

(no "SAP(SNP)/Variant" information available for 1ONI)

Asymmetric Unit (1, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UPF0076	PS01094	Uncharacterized protein family UPF0076 signature.	RIDA_HUMAN	105-123	9	A:105-123 B:105-123 C:105-123 D:105-123 E:105-123 F:105-123 G:105-123 H:105-123 I:105-123

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UPF0076	PS01094	Uncharacterized protein family UPF0076 signature.	RIDA_HUMAN	105-123	3	A:105-123 B:105-123 C:105-123 - - - - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UPF0076	PS01094	Uncharacterized protein family UPF0076 signature.	RIDA_HUMAN	105-123	3	- - - D:105-123 E:105-123 F:105-123 - - -

Biological Unit 3 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UPF0076	PS01094	Uncharacterized protein family UPF0076 signature.	RIDA_HUMAN	105-123	3	- - - - - - G:105-123 H:105-123 I:105-123

Asymmetric Unit (6, 54)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000254878	1a	ENSE00002126599	chr8:99129469-99129260	210	RIDA_HUMAN	1-22	22	9	A:2-22 B:2-22 C:2-22 D:2-22 E:2-22 F:2-22 G:2-22 H:2-22 I:2-22	21 21 21 21 21 21 21 21 21
1.3b	ENST00000254878	3b	ENSE00001382719	chr8:99120979-99120874	106	RIDA_HUMAN	22-57	36	9	A:22-57 B:22-57 C:22-57 D:22-57 E:22-57 F:22-57 G:22-57 H:22-57 I:22-57	36 36 36 36 36 36 36 36 36
1.4b	ENST00000254878	4b	ENSE00000888397	chr8:99118554-99118500	55	RIDA_HUMAN	58-76	19	9	A:58-76 B:58-76 C:58-76 D:58-76 E:58-76 F:58-76 G:58-76 H:58-76 I:58-76	19 19 19 19 19 19 19 19 19
1.5	ENST00000254878	5	ENSE00000701534	chr8:99118234-99118166	69	RIDA_HUMAN	76-99	24	9	A:76-99 B:76-99 C:76-99 D:76-99 E:76-99 F:76-99 G:76-99 H:76-99 I:76-99	24 24 24 24 24 24 24 24 24
1.6	ENST00000254878	6	ENSE00000701532	chr8:99116772-99116717	56	RIDA_HUMAN	99-117	19	9	A:99-117 B:99-117 C:99-117 D:99-117 E:99-117 F:99-117 G:99-117 H:99-117 I:99-117	19 19 19 19 19 19 19 19 19
1.7f	ENST00000254878	7f	ENSE00001026779	chr8:99115132-99114572	561	RIDA_HUMAN	118-137	20	9	A:118-137 B:118-135 C:118-135 D:118-135 E:118-135 F:118-135 G:118-135 H:118-136 I:118-136	20 18 18 18 18 18 18 19 19

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:136
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTASL 137
               SCOP domains d1onia_ A: 14.5 kda translational inhibitor protein, L-PSP                                                                               SCOP domains
               CATH domains 1oniA00 A:2-137  [code=3.30.1330.40, no name defined]                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            -------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f            Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: A:22-57             ------------------Exon 1.5  PDB: A:76-99  -------------------------------------- Transcript 1 (2)
                 1oni A   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTASL 137
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain B from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onib_ B: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniB00 B:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: B:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: B:22-57             ------------------Exon 1.5  PDB: B:76-99  ------------------------------------ Transcript 1 (2)
                 1oni B   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain C from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onic_ C: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniC00 C:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee...ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: C:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: C:22-57             ------------------Exon 1.5  PDB: C:76-99  ------------------------------------ Transcript 1 (2)
                 1oni C   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain D from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onid_ D: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniD00 D:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: D:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: D:22-57             ------------------Exon 1.5  PDB: D:76-99  ------------------------------------ Transcript 1 (2)
                 1oni D   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain E from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onie_ E: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniE00 E:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee...eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: E:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: E:22-57             ------------------Exon 1.5  PDB: E:76-99  ------------------------------------ Transcript 1 (2)
                 1oni E   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain F from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onif_ F: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniF00 F:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee...eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: F:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: F:22-57             ------------------Exon 1.5  PDB: F:76-99  ------------------------------------ Transcript 1 (2)
                 1oni F   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain G from PDB  Type:PROTEIN  Length:134
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
               SCOP domains d1onig_ G: 14.5 kda translational inhibitor protein, L-PSP                                                                             SCOP domains
               CATH domains 1oniG00 G:2-135  [code=3.30.1330.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------ PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: G:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f          Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: G:22-57             ------------------Exon 1.5  PDB: G:76-99  ------------------------------------ Transcript 1 (2)
                 1oni G   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTA 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain H from PDB  Type:PROTEIN  Length:135
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTAS 136
               SCOP domains d1onih_ H: 14.5 kda translational inhibitor protein, L-PSP                                                                              SCOP domains
               CATH domains 1oniH00 H:2-136  [code=3.30.1330.40, no name defined]                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: H:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f           Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: H:22-57             ------------------Exon 1.5  PDB: H:76-99  ------------------------------------- Transcript 1 (2)
                 1oni H   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTAS 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain I from PDB  Type:PROTEIN  Length:135
 aligned with RIDA_HUMAN | P52758 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           RIDA_HUMAN     2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTAS 136
               SCOP domains d1onii_ I: 14.5 kda translational inhibitor protein, L-PSP                                                                              SCOP domains
               CATH domains 1oniI00 I:2-136  [code=3.30.1330.40, no name defined]                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee...ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------UPF0076            ------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: I:2-2-----------------------------------Exon 1.4b          ----------------------Exon 1.6           Exon 1.7f           Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.3b  PDB: I:22-57             ------------------Exon 1.5  PDB: I:76-99  ------------------------------------- Transcript 1 (2)
                 1oni I   2 SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTAS 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Bacillus chorismate mutase-like (324)

Superfamily: YjgF-like (45)

Family: YjgF/L-PSP (23)

Protein domain: 14.5 kda translational inhibitor protein, L-PSP (3)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1onia_	A:
1b	d1onib_	B:
1c	d1onic_	C:
1d	d1onid_	D:
1e	d1onie_	E:
1f	d1onif_	F:
1g	d1onig_	G:
1h	d1onih_	H:
1i	d1onii_	I:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: 60s Ribosomal Protein L30; Chain: A; (235)

Homologous Superfamily: [code=3.30.1330.40, no name defined] (35)

Human (Homo sapiens) (1)

1a	1oniB00	B:2-135
1b	1oniC00	C:2-135
1c	1oniD00	D:2-135
1d	1oniE00	E:2-135
1e	1oniF00	F:2-135
1f	1oniG00	G:2-135
1g	1oniH00	H:2-136
1h	1oniI00	I:2-136
1i	1oniA00	A:2-137

(no "Pfam Domain" information available for 1ONI)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I (RIDA_HUMAN | P52758)

molecular function
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0043167	ion binding	Interacting selectively and non-covalently with ions, charged atoms or groups of atoms.
	GO:0036041	long-chain fatty acid binding	Interacting selectively and non-covalently with a long-chain fatty acid. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:1904012	platinum binding	Interacting selectively and non-covalently with platinum.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
	GO:1904013	xenon atom binding	Interacting selectively and non-covalently with xenon atom.
biological process
	GO:0070314	G1 to G0 transition	A cell cycle arrest process that results in arrest during G1 phase, whereupon the cell enters a specialized resting state known as G0 or quiescence.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0007420	brain development	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
	GO:0001822	kidney development	The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
	GO:0030324	lung development	The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
	GO:0050680	negative regulation of epithelial cell proliferation	Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0006449	regulation of translational termination	Any process that modulates the frequency, rate or extent of translational termination.
	GO:0033993	response to lipid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus.
	GO:1902074	response to salt	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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	1oni
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

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PROSITE Motifs (1, 9)

Exons (6, 54)

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