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(-) Description

Title :  TRANSCARBOXYLASE 12S CRYSTAL STRUCTURE: HEXAMER ASSEMBLY AND SUBSTRATE BINDING TO A MULTIENZYME CORE (WITH HYDROLYZED METHYLMALONYL-COENZYME A BOUND)
 
Authors :  P. R. Hall, Y. -F. Wang, R. E. Rivera-Hainaj, X. Zheng, M. Pustai-Carey, P. R. Carey, V. C. Yee
Date :  27 Feb 03  (Deposition) - 20 May 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  D,E,F  (2x)
Keywords :  Carboxyl Transferase, Domain Duplication, Multienzyme Complex, Transcarboxylase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. R. Hall, Y. -F. Wang, R. E. Rivera-Hainaj, X. Zheng, M. Pustai-Carey P. R. Carey, V. C. Yee
Transcarboxylase 12S Crystal Structure: Hexamer Assembly An Substrate Binding To A Multienzyme Core
Embo J. V. 22 2334 2003
PubMed-ID: 12743028  |  Reference-DOI: 10.1093/EMBOJ/CDG244

(-) Compounds

Molecule 1 - METHYLMALONYL-COA CARBOXYLTRANSFERASE 12S SUBUNIT
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC19
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PROPIONIBACTERIUM FREUDENREICHII
    Organism Taxid: 1744
    Synonym: TRANSCARBOXYLASE 12S

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (2x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1CD3Ligand/IonCADMIUM ION
2MCA6Ligand/IonMETHYLMALONYL-COENZYME A
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MCA6Ligand/IonMETHYLMALONYL-COENZYME A
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MCA6Ligand/IonMETHYLMALONYL-COENZYME A
3MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:388 , HOH A:7006 , HOH A:7009 , HOH A:7407 , HIS D:388 , HOH D:4368BINDING SITE FOR RESIDUE CD A 7001
02AC2SOFTWAREHIS B:388 , HOH B:7010 , HOH B:7252 , HIS E:388 , HOH E:4466 , HOH E:4468BINDING SITE FOR RESIDUE CD B 7002
03AC3SOFTWAREHIS C:388 , HOH C:7009 , HOH C:7010 , HIS F:388 , HOH F:6008 , HOH F:6258BINDING SITE FOR RESIDUE CD C 7003
04AC4SOFTWAREARG A:34 , ARG A:35 , PHE A:105 , MET A:108 , GLY A:109 , SER A:111 , GLY A:141 , ALA A:143 , HOH A:7158 , HOH A:7535BINDING SITE FOR RESIDUE MCA A 4001
05AC5SOFTWAREARG B:35 , MET B:108 , GLY B:109 , SER B:111 , ALA B:143 , HOH B:7215 , HOH B:7351 , HOH B:7359 , HOH B:7416 , HOH B:7499BINDING SITE FOR RESIDUE MCA B 4002
06AC6SOFTWAREARG C:34 , ARG C:35 , LYS C:38 , PHE C:105 , MET C:108 , GLY C:109 , SER C:111 , GLY C:141 , ALA C:143 , HOH C:7148 , HOH C:7494 , HOH C:7535BINDING SITE FOR RESIDUE MCA C 4003
07AC7SOFTWAREARG D:34 , ARG D:35 , LYS D:38 , PHE D:105 , MET D:108 , GLY D:109 , SER D:111 , GLY D:141 , ALA D:143 , HOH D:4240 , HOH D:4282 , HOH D:4361BINDING SITE FOR RESIDUE MCA D 4004
08AC8SOFTWAREHOH A:7494 , ARG E:34 , ARG E:35 , LYS E:38 , MET E:108 , GLY E:109 , SER E:111 , GLY E:141 , ALA E:143 , HOH E:4140 , HOH E:4384 , HOH E:4494 , HOH E:4515BINDING SITE FOR RESIDUE MCA E 4005
09AC9SOFTWAREARG F:34 , ARG F:35 , LYS F:38 , PHE F:105 , MET F:108 , GLY F:109 , SER F:111 , GLY F:141 , ALA F:143 , HOH F:6104 , HOH F:6416 , HOH F:6442 , HOH F:6537BINDING SITE FOR RESIDUE MCA F 4006
10BC1SOFTWARELYS F:251 , ASN F:268 , TRP F:303 , ASP F:305 , HOH F:6246 , HOH F:6270 , HOH F:6284 , HOH F:6546 , HOH F:6563BINDING SITE FOR RESIDUE MPD F 6006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ON9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ON9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ON9)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_CT_NTERPS50980 Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile.12S_PROFR13-268
 
 
 
 
 		  6A:13-268
B:13-268
C:13-268
D:13-268
E:13-268
F:13-268
2COA_CT_CTERPS50989 Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile.12S_PROFR274-506
 
 
 
 
 		  6A:274-506
B:274-506
C:274-506
D:274-506
E:274-506
F:274-506
Biological Unit 1 (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_CT_NTERPS50980 Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile.12S_PROFR13-268
 
 
 
 
 		  6A:13-268
B:13-268
C:13-268
D:13-268
E:13-268
F:13-268
2COA_CT_CTERPS50989 Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile.12S_PROFR274-506
 
 
 
 
 		  6A:274-506
B:274-506
C:274-506
D:274-506
E:274-506
F:274-506
Biological Unit 2 (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_CT_NTERPS50980 Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile.12S_PROFR13-268
 
 
 
 
 		  6-
-
-
D:13-268
E:13-268
F:13-268
2COA_CT_CTERPS50989 Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile.12S_PROFR274-506
 
 
 
 
 		  6-
-
-
D:274-506
E:274-506
F:274-506

(-) Exons   (0, 0)

(no "Exon" information available for 1ON9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:516
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:516
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
            12S_PROFR     9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9a1 A:9-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                d1on9a2 A:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9A01 A:9-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                      ----------1on9A02 A:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee........hhhhh....hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhh....................hhhhhhh.........hhhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhh.hhhhh..eeee....eee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----COA_CT_NTER  PDB: A:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: A:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1on9 A   9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      


Chain B from PDB  Type:PROTEIN  Length:516
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:516
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
            12S_PROFR     9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9b1 B:9-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                d1on9b2 B:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9B01 B:9-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                      ----------1on9B02 B:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee.................hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhh.....................hhhhhhh.........hhhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhhhhh..eeee....eee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----COA_CT_NTER  PDB: B:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: B:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1on9 B   9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      


Chain C from PDB  Type:PROTEIN  Length:514
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:517
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       
            12S_PROFR     8 KLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9c1 C:8-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                 d1on9c2 C:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9C01 C:8-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                       ----------1on9C02 C:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee........hhhhh....hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhh....hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhh....................hhhhhhh.........hhhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhhhhh..eeee....eee..hhhhhhhhh--...-...hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----COA_CT_NTER  PDB: C:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: C:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1on9 C   8 KLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVI--KEI-AADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447 |  | |457       467       477       487       497       507       517       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   449  | | |                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      452 | |                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        454 |                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          456                                                                    


Chain D from PDB  Type:PROTEIN  Length:504
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:518
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516        
            12S_PROFR     7 LKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9d1 D:7-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                  d1on9d2 D:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9D01 D:7-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                        ----------1on9D02 D:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee........hhhhh....hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhh.....................hhhhhhh.........hhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhhhhh..eeee....eee..hhhhhhhhhh-----------..---hhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------COA_CT_NTER  PDB: D:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: D:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1on9 D   7 LKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIF-----------AM---KIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446   |     -     ||  -|      476       486       496       506       516        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     450         462| 467                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  463                                                             


Chain E from PDB  Type:PROTEIN  Length:519
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:519
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515         
            12S_PROFR     6 NLKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9e1 E:6-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                   d1on9e2 E:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9E01 E:6-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                         ----------1on9E02 E:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee........hhhhh....hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhh......................hhhhhh........hhhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhhhhh..eeee....eee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------COA_CT_NTER  PDB: E:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: E:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1on9 E   6 NLKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515         


Chain F from PDB  Type:PROTEIN  Length:516
 aligned with 12S_PROFR | Q8GBW6 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:516
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
            12S_PROFR     9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
               SCOP domains d1on9f1 F:9-260 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                d1on9f2 F:261-524 Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)                                                                                                                                                                                           SCOP domains
               CATH domains 1on9F01 F:9-262 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                      ----------1on9F02 F:273-524 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                   CATH domains
           Pfam domains (1) -----------------------------Carboxyl_trans-1on9F01 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (1)
           Pfam domains (2) -----------------------------Carboxyl_trans-1on9F02 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (2)
           Pfam domains (3) -----------------------------Carboxyl_trans-1on9F03 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (3)
           Pfam domains (4) -----------------------------Carboxyl_trans-1on9F04 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (4)
           Pfam domains (5) -----------------------------Carboxyl_trans-1on9F05 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (5)
           Pfam domains (6) -----------------------------Carboxyl_trans-1on9F06 F:38-518                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ------ Pfam domains (6)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.....eee........hhhhh....hhhh.eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...hhhhhhh.eeeee...eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhh......................hhhhhh........hhhhhhhhhhhhh.eeee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhhhhh..eeee....eee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----COA_CT_NTER  PDB: F:13-268 UniProt: 13-268                                                                                                                                                                                                                      -----COA_CT_CTER  PDB: F:274-506 UniProt: 274-506                                                                                                                                                                                             ------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1on9 F   9 LASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHGNFPC 524
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518
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 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: ClpP_crotonase (88)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (12S_PROFR | Q8GBW6)
molecular function
    GO:0003989    acetyl-CoA carboxylase activity    Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0047154    methylmalonyl-CoA carboxytransferase activity    Catalysis of the reaction: pyruvate + D-methylmalonyl-CoA = oxaloacetic acid + propionyl-CoA.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
cellular component
    GO:0009317    acetyl-CoA carboxylase complex    A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        12S_PROFR | Q8GBW6: 1on3

(-) Related Entries Specified in the PDB File

1on3 TRANSCARBOXYLASE 12S BOUND TO METHYLMALONYL-COA AND METHYLMALONIC ACID