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(-) Description

Title :  SOLUTION STRUCTURE OF SOLUBLE DOMAIN OF SCO1 FROM BACILLUS SUBTILIS
 
Authors :  E. Balatri, L. Banci, I. Bertini, F. Cantini, S. Ciofi-Baffoni, Structural Proteomics In Europe (Spine)
Date :  27 Feb 03  (Deposition) - 11 Nov 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
Keywords :  Cox Assembly Protein, Copper Protein, Nmr Structure, Sco1 From B. Subtilis, Thioredoxin-Like Fold, Ypmq, Structural Proteomics In Europe, Spine, Structural Genomics, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Balatri, L. Banci, I. Bertini, F. Cantini, S. Ciofi-Baffoni
Solution Structure Of Sco1: A Thioredoxin-Like Protein Involved In Cytochrome C Oxidase Assembly
Structure V. 11 1431 2003
PubMed-ID: 14604533  |  Reference-DOI: 10.1016/J.STR.2003.10.004
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SCO1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21 (DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SOLUBLE DOMAIN
    Gene: YPMQ
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: HYPOTHETICAL PROTEIN YPMQ

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ON4)

(-) Sites  (0, 0)

(no "Site" information available for 1ON4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ON4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ON4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ON4)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOREDOXIN_2PS51352 Thioredoxin domain profile.SCO1_BACSU26-191  1A:7-172

(-) Exons   (0, 0)

(no "Exon" information available for 1ON4)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with SCO1_BACSU | P54178 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:174
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    
           SCO1_BACSU    20 GGQQIKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK 193
               SCOP domains d1on4a_ A: Thioredoxin-like protein Sco1 (YpmQ), soluble domain                                                                                                                SCOP domains
               CATH domains 1on4A00 A:1-174 Glutaredoxin                                                                                                                                                   CATH domains
               Pfam domains ----SCO1-SenC-1on4A01 A:5-155                                                                                                                              ------------------- Pfam domains
         Sec.struct. author ..........ee....eee.....eee.hhh....eeeeee...........hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhh....hhh.eeee...hhhhhhhhhhhhhh.................eeee....eeeeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------THIOREDOXIN_2  PDB: A:7-172 UniProt: 26-191                                                                                                                           -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1on4 A   1 HMLEIKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (SCO1_BACSU | P54178)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  1on4
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  SCO1_BACSU | P54178
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCO1_BACSU | P54178: 1xzo

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