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(-) Description

Title :  NON-MYRISTOYLATED WILD-TYPE BOVINE RECOVERIN WITH CALCIUM BOUND TO EF-HAND 3
 
Authors :  O. H. Weiergraber, J. Granzin
Date :  26 Feb 03  (Deposition) - 25 Nov 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Ef-Hand, Helix-Loop-Helix, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. H. Weiergraber, I. I. Senin, P. P. Philippov, J. Granzin, K. -W. Koch
Impact Of N-Terminal Myristoylation On The Ca2+-Dependent Conformational Transition In Recoverin
J. Biol. Chem. V. 278 22972 2003
PubMed-ID: 12686556  |  Reference-DOI: 10.1074/JBC.M300447200

(-) Compounds

Molecule 1 - RECOVERIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11D
    Expression System Strain: REC/BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RCV1
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:110 , ASP A:112 , ASN A:114 , THR A:116 , GLU A:121 , HOH A:1022BINDING SITE FOR RESIDUE CA A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OMR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OMR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OMR)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.RECO_BOVIN41-59
61-96
97-132
147-182		  4A:41-59
A:61-96
A:97-132
A:147-182
2EF_HAND_1PS00018 EF-hand calcium-binding domain.RECO_BOVIN74-86
110-122		  2A:74-86
A:110-122
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.RECO_BOVIN41-59
61-96
97-132
147-182		  4A:41-59
A:61-96
A:97-132
A:147-182
2EF_HAND_1PS00018 EF-hand calcium-binding domain.RECO_BOVIN74-86
110-122		  2A:74-86
A:110-122
Biological Unit 2 (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.RECO_BOVIN41-59
61-96
97-132
147-182		  16A:41-59
A:61-96
A:97-132
A:147-182
2EF_HAND_1PS00018 EF-hand calcium-binding domain.RECO_BOVIN74-86
110-122		  8A:74-86
A:110-122

(-) Exons   (3, 3)

Asymmetric Unit (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000350691ENSBTAE00000329786chr19:29601555-29601120436RECO_BOVIN1-1251251A:2-125124
1.2ENSBTAT000000350692ENSBTAE00000276495chr19:29596912-29596795118RECO_BOVIN126-165401A:126-16540
1.3ENSBTAT000000350693ENSBTAE00000276494chr19:29593378-29592894485RECO_BOVIN165-202381A:165-20238

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
 aligned with RECO_BOVIN | P21457 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:201
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201 
           RECO_BOVIN     2 GNSKSGALSKEILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKLKEKKL 202
               SCOP domains d1omra_ A: Recoverin                                                                                                                                                                                      SCOP domains
               CATH domains ----------1omrA01 A:12-97 EF-hand                                                               ----1omrA02 A:102-189 EF-hand                                                               ------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------efhand-1omrA01 A:101-129     ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...eeehhhhhhhhhhhh....hhhhhhhhhhh.......eeehhhhhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------EF_HAND_2          -EF_HAND_2  PDB: A:61-96             EF_HAND_2  PDB: A:97-132            --------------EF_HAND_2  PDB: A:147-182           -------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------EF_HAND_1    -----------------------EF_HAND_1    -------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:2-125 UniProt: 1-125 [INCOMPLETE]                                                                          Exon 1.2  PDB: A:126-165                ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: A:165-202               Transcript 1 (2)
                 1omr A   2 GNSKSGALSKEILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKLKEKKL 202
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (RECO_BOVIN | P21457)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007602    phototransduction    The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
    GO:0051924    regulation of calcium ion transport    Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
    GO:0007601    visual perception    The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RECO_BOVIN | P21457: 1iku 1jsa 1la3 1omv 1rec 2het 2i94 4m2o 4m2p 4m2q 4mlw 4yi8 4yi9

(-) Related Entries Specified in the PDB File

1omv NON-MYRISTOYLATED BOVINE RECOVERIN (E85Q MUTANT) WITH CALCIUM BOUND TO EF-HAND 3