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(-) Description

Title :  THE CRYSTAL STRUCTURE OF C3STAU2 FROM S. AUREUS IN WITH NAD
 
Authors :  H. R. Evans, J. M. Sutton, D. E. Holloway, J. Ayriss, C. C. Shone, K. R. Acharya
Date :  16 Jul 03  (Deposition) - 28 Aug 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym./Biol. Unit :  A
Keywords :  Adp-Ribosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. R. Evans, J. M. Sutton, D. E. Holloway, J. Ayriss, C. C. Shone, K. R. Acharya
The Crystal Structure Of C3Stau2 From Staphylococcus Aureus And Its Complex With Nad
J. Biol. Chem. V. 278 45924 2003
PubMed-ID: 12933793  |  Reference-DOI: 10.1074/JBC.M307719200

(-) Compounds

Molecule 1 - ADP-RIBOSYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Other Details: SYNTHETIC GENE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:37 , ASN A:44 , ARG A:48 , TYR A:84 , ARG A:85 , LEU A:86 , ASN A:88 , ASP A:90 , TYR A:91 , GLU A:133 , SER A:138 , THR A:139 , GLN A:140 , ARG A:150 , GLN A:178 , GLU A:180 , HOH A:2039 , HOH A:2135BINDING SITE FOR RESIDUE NAD A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OJZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OJZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OJZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OJZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1OJZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
 aligned with Q9ADS9_STAAU | Q9ADS9 from UniProtKB/TrEMBL  Length:212

    Alignment length:212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
         Q9ADS9_STAAU     1 AETKNFTDLVEATKWGNSLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSENIQEQVRQLDSTISKSVTPDSVYVYRLLNLDYLSSITGFTREDLHMLQQTNNGQYNEALVSKLNNLMNSRIYRENGYSSTQLVSGAALAGRPIELKLELPKGTKAAYIDSKELTAYPGQQEVLLPRGTEYAVGSVKLSDNKRKIIITAVVFKK 212
               SCOP domains d1ojza_ A: Exoenzyme c3                                                                                                                                                                                              SCOP domains
               CATH domains 1ojzA00 A:1-212 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                                      CATH domains
               Pfam domains -----------ADPrib_exo_Tox-1ojzA01 A:12-212                                                                                                                                                                           Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......eeeeeeehhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhh..eeee...eeee...........eeeeeee......ee.............eeee...eeeeeeeeee......eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ojz A   1 AETKNFTDLVEATKWGNSLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSENIQEQVRQLDSTISKSVTPDSVYVYRLLNLDYLSSITGFTREDLHMLQQTNNGQYNEALVSKLNNLMNSRIYRENGYSSTQLVSGAALAGRPIELKLELPKGTKAAYIDSKELTAYPGQQEVLLPRGTEYAVGSVKLSDNKRKIIITAVVFKK 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: ADP-ribosyl (56)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9ADS9_STAAU | Q9ADS9)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016763    transferase activity, transferring pentosyl groups    Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006471    protein ADP-ribosylation    The transfer, from NAD, of ADP-ribose to protein amino acids.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9ADS9_STAAU | Q9ADS9: 1ojq

(-) Related Entries Specified in the PDB File

1gxy CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
1gxz CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
1gy0 CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
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1og1 CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2 IN COMPLEX WITH TAD
1og3 CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2 MUTANT E189I IN KOMPLEX WITH NAD
1og4 CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2 MUTANT E189A IN COMPLEX WITH NADH
1ojq THE CRYSTAL STRUCTURE OF C3STAU2 FROM S. AUREUS