1OJH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF NBLA FROM PCC 7120

Authors :   R. Bienert, K. Baier, W. Lockau, U. Heinemann

Date :   10 Jul 03 (Deposition) - 15 Jul 04 (Release) - 03 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K,L  (1x)

Keywords :   Degradation Protein, Phycobilisome Degradation, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Bienert, K. Baier, R. Volkmer, W. Lockau, U. Heinemann
Crystal Structure Of Nbla From Anabaena Sp. Pcc 7120, A Small Protein Playing A Key Role In Phycobilisome Degradation.
J. Biol. Chem. V. 281 5216 2006
PubMed-ID: 16356935 | Reference-DOI: 10.1074/JBC.M507243200
(for further references see the PDB file header)

Molecule 1 - NBLA
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Organism Scientific	:	ANABAENA SP. PCC 7120
	Organism Taxid	:	103690
	Synonym	:	PHYCOBILISOME DEGRADATION PROTEIN HOMOLOGUE

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:									I	J
Biological Unit 6 (1x)	:											K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 26)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:32 , ASP G:32	BINDING SITE FOR RESIDUE EDO A1001
2	AC2	SOFTWARE	ARG K:44 , HOH K:2021 , TYR L:38 , GLU L:45	BINDING SITE FOR RESIDUE EDO A1002

(no "SS Bond" information available for 1OJH)

(no "Cis Peptide Bond" information available for 1OJH)

(no "SAP(SNP)/Variant" information available for 1OJH)

(no "PROSITE Motif" information available for 1OJH)

(no "Exon" information available for 1OJH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:52
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:52
                                    14        24        34        44        54  
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQW 56
               SCOP domains d1ojha_ A: Phycobilisome degradation protein NblA    SCOP domains
               CATH domains 1ojhA00 A:5-56 Helix hairpin bin                     CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  1ojh A  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQW 56
                                    14        24|       34      | 44        54  
                                               25-MSE          41-MSE

Chain B from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    14        24        34        44        54
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKH 54
               SCOP domains d1ojhb_ B: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhB00 B:5-54 Helix hairpin bin                   CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh B  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKH 54
                                    14        24|       34      | 44        54
                                               25-MSE          41-MSE

Chain C from PDB  Type:PROTEIN  Length:53
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:53
                                    15        25        35        45        55   
          Q8YNP7_NOSS1    6 ELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWGL 58
               SCOP domains d1ojhc_ C: Phycobilisome degradation protein NblA     SCOP domains
               CATH domains 1ojhC00 C:6-58 Helix hairpin bin                      CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  1ojh C  6 ELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQWGL 58
                                    15        25        35     |  45        55   
                                              25-MSE          41-MSE

Chain D from PDB  Type:PROTEIN  Length:56
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:56
                                    11        21        31        41        51      
          Q8YNP7_NOSS1    2 NQPIELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57
               SCOP domains d1ojhd_ D: Phycobilisome degradation protein NblA        SCOP domains
               CATH domains 1ojhD00 D:2-57 Helix hairpin bin                         CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                  1ojh D  2 NQPIELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQWG 57
                                    11        21   |    31        41        51      
                                                  25-MSE          41-MSE

Chain E from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    14        24        34        44        54
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKH 54
               SCOP domains d1ojhe_ E: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhE00 E:5-54 Helix hairpin bin                   CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh E  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKH 54
                                    14        24|       34      | 44        54
                                               25-MSE          41-MSE

Chain F from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    14        24        34        44        54
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKH 54
               SCOP domains d1ojhf_ F: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhF00 F:5-54 Helix hairpin bin                   CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh F  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKH 54
                                    14        24|       34      | 44        54
                                               25-MSE          41-MSE

Chain G from PDB  Type:PROTEIN  Length:53
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:53
                                    13        23        33        43        53   
          Q8YNP7_NOSS1    4 PIELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQW 56
               SCOP domains d1ojhg_ G: Phycobilisome degradation protein NblA     SCOP domains
               CATH domains 1ojhG00 G:4-56 Helix hairpin bin                      CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  1ojh G  4 PIELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQW 56
                                    13        23 |      33       |43        53   
                                                25-MSE          41-MSE

Chain H from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    14        24        34        44        54
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKH 54
               SCOP domains d1ojhh_ H: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhH00 H:5-54 Helix hairpin bin                   CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh H  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKH 54
                                    14        24|       34      | 44        54
                                               25-MSE          41-MSE

Chain I from PDB  Type:PROTEIN  Length:54
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:54
                                    13        23        33        43        53    
          Q8YNP7_NOSS1    4 PIELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57
               SCOP domains d1ojhi_ I: Phycobilisome degradation protein NblA      SCOP domains
               CATH domains 1ojhI00 I:4-57 Helix hairpin bin                       CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                  1ojh I  4 PIELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQWG 57
                                    13        23 |      33       |43        53    
                                                25-MSE          41-MSE

Chain J from PDB  Type:PROTEIN  Length:51
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:51
                                    16        26        36        46        56 
          Q8YNP7_NOSS1    7 LSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57
               SCOP domains d1ojhj_ J: Phycobilisome degradation protein NblA   SCOP domains
               CATH domains 1ojhJ00 J:7-57 Helix hairpin bin                    CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------- Transcript
                  1ojh J  7 LSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQWG 57
                                    16        26        36    |   46        56 
                                             25-MSE          41-MSE

Chain K from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    16        26        36        46        56
          Q8YNP7_NOSS1    7 LSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQW 56
               SCOP domains d1ojhk_ K: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhK00 K:7-56 Helix hairpin bin                   CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh K  7 LSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKHQW 56
                                    16        26        36    |   46        56
                                             25-MSE          41-MSE

Chain L from PDB  Type:PROTEIN  Length:50
 aligned with Q8YNP7_NOSS1 | Q8YNP7 from UniProtKB/TrEMBL  Length:65

    Alignment length:50
                                    14        24        34        44        54
          Q8YNP7_NOSS1    5 IELSLEQQFSIRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKH 54
               SCOP domains d1ojhl_ L: Phycobilisome degradation protein NblA  SCOP domains
               CATH domains 1ojhL00 L:5-54 Helix hairpin bin                   CATH domains
           Pfam domains (1) NblA-1ojhL01 L:5-54                                Pfam domains (1)
           Pfam domains (2) NblA-1ojhL02 L:5-54                                Pfam domains (2)
           Pfam domains (3) NblA-1ojhL03 L:5-54                                Pfam domains (3)
           Pfam domains (4) NblA-1ojhL04 L:5-54                                Pfam domains (4)
           Pfam domains (5) NblA-1ojhL05 L:5-54                                Pfam domains (5)
           Pfam domains (6) NblA-1ojhL06 L:5-54                                Pfam domains (6)
           Pfam domains (7) NblA-1ojhL07 L:5-54                                Pfam domains (7)
           Pfam domains (8) NblA-1ojhL08 L:5-54                                Pfam domains (8)
           Pfam domains (9) NblA-1ojhL09 L:5-54                                Pfam domains (9)
          Pfam domains (10) NblA-1ojhL10 L:5-54                                Pfam domains (10)
          Pfam domains (11) NblA-1ojhL11 L:5-54                                Pfam domains (11)
          Pfam domains (12) NblA-1ojhL12 L:5-54                                Pfam domains (12)
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  1ojh L  5 IELSLEQQFSIRSFATQVQNmSHDQAKDFLVKLYEQmVVREATYQELLKH 54
                                    14        24|       34      | 44        54
                                               25-MSE          41-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: NblA-like (1)

Superfamily: NblA-like (1)

Family: NblA-like (1)

Protein domain: Phycobilisome degradation protein NblA (1)

Nostoc sp. PCC 7120 [TaxId: 103690] (1)

1a	d1ojha_	A:
1b	d1ojhb_	B:
1c	d1ojhk_	K:
1d	d1ojhl_	L:
1e	d1ojhc_	C:
1f	d1ojhd_	D:
1g	d1ojhe_	E:
1h	d1ojhf_	F:
1i	d1ojhg_	G:
1j	d1ojhh_	H:
1k	d1ojhi_	I:
1l	d1ojhj_	J:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Helix Hairpins (718)

Homologous Superfamily: Helix hairpin bin (1)

Pcc 7120 (Anabaena sp) (1)

1a	1ojhA00	A:5-56
1b	1ojhJ00	J:7-57
1c	1ojhI00	I:4-57
1d	1ojhD00	D:2-57
1e	1ojhC00	C:6-58
1f	1ojhG00	G:4-56
1g	1ojhB00	B:5-54
1h	1ojhE00	E:5-54
1i	1ojhF00	F:5-54
1j	1ojhH00	H:5-54
1k	1ojhK00	K:7-56
1l	1ojhL00	L:5-54

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: NblA] (3)

Family: NblA (3)

Nostoc sp. (strain PCC 7120 / UTEX 2576) (1)

1a	NblA-1ojhL01	L:5-54
1b	NblA-1ojhL02	L:5-54
1c	NblA-1ojhL03	L:5-54
1d	NblA-1ojhL04	L:5-54
1e	NblA-1ojhL05	L:5-54
1f	NblA-1ojhL06	L:5-54
1g	NblA-1ojhL07	L:5-54
1h	NblA-1ojhL08	L:5-54
1i	NblA-1ojhL09	L:5-54
1j	NblA-1ojhL10	L:5-54
1k	NblA-1ojhL11	L:5-54
1l	NblA-1ojhL12	L:5-54

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1OJH)

Asymmetric Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 26)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (1, 12)

Gene Ontology (0, 0)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File