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Title :  THE CRYSTAL STRUCTURE OF NATIVE TRYPANOSOMA CRUZI DUTPASE
 
Authors :  M. Harkiolaki, E. J. Dodson, V. Bernier-Villamor, J. P. Turkenburg, D. Gonzalez-Pacanowska, K. S. Wilson
Date :  07 May 03  (Deposition) - 22 Jan 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase, Dutpase, Trypanosoma Cruzi, Native, X-Ray, Dimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Harkiolaki, E. J. Dodson, V. Bernier-Villamor, J. P. Turkenburg, D. Gonzalez-Pacanowska, K. S. Wilson
The Crystal Structure Of Trypanosoma Cruzi Dutpase Reveals A Novel Dutp/Dudp Binding Fold
Structure V. 12 41 2004
PubMed-ID: 14725764  |  Reference-DOI: 10.1016/J.STR.2003.11.016

(-) Compounds

Molecule 1 - DEOXYURIDINE TRIPHOSPHATASE
    Chains: A
    EC Number: 3.6.1.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 5693
    Strain: Y
    Synonym: DUTPASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with O15923_TRYCR | O15923 from UniProtKB/TrEMBL  Length:283

    Alignment length:270
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278
         O15923_TRYCR     9 RVPARVLNSLAHLQDGLNIFMDPDWRQIRHVDDWALAITMESAELIDSYPWKWWKNVKAQTDMHNVRIEIADILHFSLSGEIQKRTQDEKGADDVALKSLKEMGFFCRPPAHAKSTAASGQRTNGGDGDGDDELLELMFFPLTEVASAVATFRNIIQLASIYRFDLITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEGVYVKVREGVEDNELLHECVQSVSVEDVLNEGTYLKAWEKIACSVFDAFGMPEEERRHAYDWLKSAA 278
               SCOP domains d1ogla_ A: Type II deoxyuridine triphosphatase                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----dUTPase_2-1oglA01 A:14-209                                                                                                                                                                          --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh..----hhhhhhhhhhhh.......--------------------............hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ogl A   9 RVPARVLNSLAHLQDGLNIFMDPDWRQIRHVDDWALAITMESAELIDSYPWKWWKNVKAQTDMHNVRIEIADILHFSLSGEIQKRTQD----DDVALKSLKEMGFFCRPPA--------------------DELLELMFFPLTEVASAVATFRNIIQLASIYRFDLITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEGVYVKVREGVEDNELLHECVQSVSVEDVLNEGTYLKAWEKIACSVFDAFGMPEEERRHAYDWLKSAA 278
                                    18        28        38        48        58        68        78        88       | -  |    108       118|        -         - |     148       158       168       178       188       198       208       218       228       238       248       258       268       278
                                                                                                                  96  101               119                  140
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1OGL)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: MazG (25)

(-) Gene Ontology  (0, 0)

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    Phe A:148 - Pro A:149   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O15923_TRYCR | O15923: 1ogk

(-) Related Entries Specified in the PDB File

1ogk THE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DUTPASE IN COMPLEX WITH DUDP