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Description

Title :   CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP-RIBOSYLTRANSFERASE ART2.2 IN COMPLEX WITH TAD

Authors :   H. Ritter, F. Koch-Nolte, V. E. Marquez, G. E. Schulz

Date :   23 Apr 03 (Deposition) - 28 Aug 03 (Release) - 12 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Transferase, Adp-Ribosyltransferase, Immuno-Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Ritter, F. Koch-Nolte, V. E. Marquez, G. E. Schulz
Substrate Binding And Catalysis Of Ecto-Adp-Ribosyltransferase 2. 2 From Rat
Biochemistry V. 42 10155 2003
PubMed-ID: 12939142 | Reference-DOI: 10.1021/BI034625W

Compounds

Molecule 1 - T-CELL ECTO-ADP-RIBOSYLTRANSFERASE 2
	Chains	:	A
	EC Number	:	2.4.2.31
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PASK60
	Expression System Strain	:	NM522
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 21-246
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 1)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	TAD	1	Ligand/Ion	BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINEDINUCLEOTIDE

Sites (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:5 , LYS A:65 , THR A:79 , ASN A:87 , ARG A:91 , ARG A:126 , GLY A:127 , THR A:130 , PHE A:132 , GLN A:144 , SER A:147 , PHE A:160 , GLU A:189 , HOH A:2030 , HOH A:2067 , HOH A:2077 , HOH A:2079 , HOH A:2091 , HOH A:2127 , HOH A:2176 , HOH A:2177 , HOH A:2178 , HOH A:2179	BINDING SITE FOR RESIDUE TAD A1227

SS Bonds (2, 2)

Asymmetric/Biological Unit

No.	Residues
1	A:21	-	A:223
2	A:121	-	A:173

Cis Peptide Bonds (1, 1)

Asymmetric/Biological Unit

No.	Residues
1	Arg A:184	-	Pro A:185

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 1OG1)

PROSITE Motifs (1, 1)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ART	PS01291	NAD:arginine ADP-ribosyltransferases signature.	NAR2B_RAT	120-132	1	A:100-112

Exons (1, 1)

Asymmetric/Biological Unit (1, 1)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000026644	1	ENSRNOE00000373063	chr1:159058780-159058707	74	NAR2B_RAT	1-17	17	0	-	-
1.3	ENSRNOT00000026644	3	ENSRNOE00000444749	chr1:159058239-159057546	694	NAR2B_RAT	18-249	232	1	A:4-226	223
1.4	ENSRNOT00000026644	4	ENSRNOE00000425759	chr1:159055875-159055461	415	NAR2B_RAT	249-275	27	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:223
 aligned with NAR2B_RAT | P20974 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:223
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
            NAR2B_RAT    24 PLMLDTAPNAFDDQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAVREFKENPGQFHYKAFHYYLTRALQLLSNGDCHSVYRGTKTRFHYTGAGSVRFGQFTSSSLSKKVAQSQEFFSDHGTLFIIKTCLGVYIKEFSFRPDQEEVLIPGYEVYQKVRTQGYNEIFLDSPKRKKSNYNCLYS 246
               SCOP domains d1og1a_ A: Eukaryotic mono-ADP-ribosyltransferase ART2.2                                                                                                                                                                        SCOP domains
               CATH domains 1og1A00 A:4-226 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                                                 CATH domains
               Pfam domains ---ART-1og1A01 A:7-219                                                                                                                                                                                                  ------- Pfam domains
         Sec.struct. author .eee..............hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.hhhhhhhhhhhh..........hhhhhhhhhhhhhh.....eeeeeee..eee......ee....eeeee.hhhhh.........eeeeeee...ee...........eeee...eeeeeeeee...eeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ART          ------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.3  PDB: A:4-226 UniProt: 18-249 [INCOMPLETE]                                                                                                                                                                             Transcript 1
                 1og1 A   4 PLMLDTAPNAFDDQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAVREFKENPGQFHYKAFHYYLTRALQLLSNGDCHSVYRGTKTRFHYTGAGSVRFGQFTSSSLSKKVAQSQEFFSDHGTLFIIKTCLGVYIKEFSFRPDQEEVLIPGYEVYQKVRTQGYNEIFLDSPKRKKSNYNCLYS 226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ADP-ribosylation (157)

Superfamily: ADP-ribosylation (157)

Family: Ecto-ART (6)

Protein domain: Eukaryotic mono-ADP-ribosyltransferase ART2.2 (6)

Norway rat (Rattus norvegicus) [TaxId: 10116] (6)

d1og1a_

CATH Domains (1, 1)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Toxin ADP-ribosyltransferase; Chain A, domain 1 (46)

Homologous Superfamily: Toxin ADP-ribosyltransferase; Chain A, domain 1 (46)

Rat (Rattus norvegicus) (6)

1og1A00

A:4-226

Pfam Domains (1, 1)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ADP-ribosyl (56)

Family: ART (3)

Rattus norvegicus (Rat) (3)

ART-1og1A01

A:7-219

Gene Ontology (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (NAR2B_RAT | P20974)

molecular function
	GO:0003956	NAD(P)+-protein-arginine ADP-ribosyltransferase activity	Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine.
	GO:0003953	NAD+ nucleosidase activity	Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0019677	NAD catabolic process	The chemical reactions and pathways resulting in the breakdown of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; catabolism may be of either the oxidized form, NAD, or the reduced form, NADH.
	GO:0006471	protein ADP-ribosylation	The transfer, from NAD, of ADP-ribose to protein amino acids.
cellular component
	GO:0031225	anchored component of membrane	The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0046658	anchored component of plasma membrane	The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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		Arg A:184 - Pro A:185	[ RasMol ]

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	1og1
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
	NAR2B_RAT \| P20974	:	1gxy 1gxz 1gy0 1og3 1og4

Related Entries Specified in the PDB File

1gxy	CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
1gxz	CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
1gy0	CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2
1og3	CRYSTAL STRUCTURE OF THE EUCARYOTIC MONO-ADP -RIBOSYLTRANSFERASE ART2.2 MUTANT E189I IN COMPLEX WITH NAD