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(-) Description

Title :  ASYMMETRIC COMPLEX BETWEEN HSLV AND I-DOMAIN DELETED HSLU (H. INFLUENZAE)
 
Authors :  A. R. Kwon, B. M. Kessler, H. S. Overkleeft, D. B. Mckay
Date :  14 Apr 03  (Deposition) - 03 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,G,H,I,L,M,N
Biol. Unit 1:  A,G,L  (6x)
Biol. Unit 2:  B,C,H,I,M,N  (3x)
Keywords :  Chaperone, Hydrolase, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Kwon, B. M. Kessler, H. S. Overkleeft, D. B. Mckay
Structure And Reactivity Of An Asymmetric Complex Between Hslv And I-Domain Deleted Hslu, A Prokaryotic Homolog Of The Eukaryotic Proteasome
J. Mol. Biol. V. 330 185 2003
PubMed-ID: 12823960  |  Reference-DOI: 10.1016/S0022-2836(03)00580-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 71421
    Strain: RD
 
Molecule 2 - ATP-DEPENDENT PROTEASE HSLV
    Chains: G, H, I, L, M, N
    EC Number: 3.4.25.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 71421
    Strain: RD

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCGHILMN
Biological Unit 1 (6x): A  G  L  
Biological Unit 2 (3x):  BC HI MN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
1ADP3Ligand/IonADENOSINE-5'-DIPHOSPHATE
2LVS3Ligand/Ion4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE
3MG12Ligand/IonMAGNESIUM ION
4PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1ADP6Ligand/IonADENOSINE-5'-DIPHOSPHATE
2LVS6Ligand/Ion4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE
3MG-1Ligand/IonMAGNESIUM ION
4PO46Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1ADP6Ligand/IonADENOSINE-5'-DIPHOSPHATE
2LVS6Ligand/Ion4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE
3MG-1Ligand/IonMAGNESIUM ION
4PO46Ligand/IonPHOSPHATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:58 , THR A:59 , LYS A:63 , GLU A:258 , GLU A:322 , ADP A:450 , MG A:451 , MG A:453 , HOH A:2002 , HOH A:2003 , HOH A:2005 , HOH A:2007BINDING SITE FOR RESIDUE PO4 A 452
02AC2SOFTWAREPRO B:58 , THR B:59 , GLY B:60 , LYS B:63 , GLU B:258 , ADP B:450 , MG B:451 , MG B:453 , HOH B:2004 , GLU C:322BINDING SITE FOR RESIDUE PO4 B 452
03AC3SOFTWAREGLU B:322 , PRO C:58 , THR C:59 , GLY C:60 , GLU C:258 , ADP C:450 , MG C:451 , MG C:453 , HOH C:2002 , HOH C:2006 , HOH C:2007BINDING SITE FOR RESIDUE PO4 C 452
04AC4SOFTWAREGLY G:157 , CYS G:160 , THR G:163BINDING SITE FOR RESIDUE MG G 454
05AC5SOFTWAREGLY H:157 , CYS H:160 , THR H:163BINDING SITE FOR RESIDUE MG H 454
06AC6SOFTWAREGLY I:157 , CYS I:160 , THR I:163BINDING SITE FOR RESIDUE MG I 454
07AC7SOFTWAREGLY L:157 , CYS L:160 , VAL L:161 , THR L:163BINDING SITE FOR RESIDUE MG L 454
08AC8SOFTWAREGLY M:157 , CYS M:160 , THR M:163BINDING SITE FOR RESIDUE MG M 454
09AC9SOFTWAREGLY N:157 , CYS N:160 , THR N:163BINDING SITE FOR RESIDUE MG N 454
10BC1SOFTWAREADP A:450 , PO4 A:452 , HOH A:2001 , HOH A:2002 , HOH A:2006 , HOH A:2007BINDING SITE FOR RESIDUE MG A 451
11BC2SOFTWAREGLU A:258 , GLU A:322 , PO4 A:452 , HOH A:2003 , HOH A:2004 , HOH A:2005 , HOH A:2007BINDING SITE FOR RESIDUE MG A 453
12BC3SOFTWAREADP B:450 , PO4 B:452 , HOH B:2001 , HOH B:2004 , HOH B:2005 , HOH B:2006BINDING SITE FOR RESIDUE MG B 451
13BC4SOFTWAREGLU B:258 , PO4 B:452 , HOH B:2002 , HOH B:2007 , GLU C:322 , HOH C:2004BINDING SITE FOR RESIDUE MG B 453
14BC5SOFTWAREADP C:450 , PO4 C:452 , HOH C:2001 , HOH C:2002 , HOH C:2005 , HOH C:2007BINDING SITE FOR RESIDUE MG C 451
15BC6SOFTWAREGLU B:322 , HOH B:2003 , GLU C:258 , PO4 C:452 , HOH C:2003 , HOH C:2006BINDING SITE FOR RESIDUE MG C 453
16BC7SOFTWAREHIS A:16 , ILE A:17 , ILE A:18 , PRO A:58 , THR A:59 , GLY A:60 , VAL A:61 , GLY A:62 , LYS A:63 , THR A:64 , GLU A:65 , GLU A:287 , LEU A:336 , ALA A:393 , MG A:451 , PO4 A:452 , HOH A:2001 , HOH A:2006BINDING SITE FOR RESIDUE ADP A 450
17BC8SOFTWAREHIS B:16 , ILE B:17 , ILE B:18 , GLN B:20 , PRO B:58 , GLY B:60 , VAL B:61 , GLY B:62 , LYS B:63 , THR B:64 , GLU B:65 , LEU B:336 , ALA B:393 , MG B:451 , PO4 B:452 , HOH B:2004 , HOH B:2005 , HOH B:2006BINDING SITE FOR RESIDUE ADP B 450
18BC9SOFTWAREHIS C:16 , ILE C:17 , ILE C:18 , PRO C:58 , THR C:59 , GLY C:60 , VAL C:61 , GLY C:62 , LYS C:63 , THR C:64 , GLU C:65 , ALA C:393 , MG C:451 , PO4 C:452 , HOH C:2005BINDING SITE FOR RESIDUE ADP C 450
19CC1SOFTWARETHR G:1 , GLN G:19 , VAL G:20 , SER G:21 , MET G:27 , LYS G:33 , PHE G:46 , ALA G:47 , GLY G:48 , THR G:50 , THR G:107 , ILE G:109 , ASP G:111 , GLY G:124 , SER G:125BINDING SITE FOR RESIDUE LVS G 0
20CC2SOFTWARETHR H:1 , VAL H:20 , SER H:21 , LYS H:33 , PHE H:46 , ALA H:47 , GLY H:48 , THR H:50 , GLY H:124 , SER H:125 , THR I:107BINDING SITE FOR RESIDUE LVS H 0
21CC3SOFTWAREGLU H:92 , THR I:1 , VAL I:20 , SER I:21 , PHE I:46 , GLY I:48 , THR I:50 , GLY I:124 , SER I:125BINDING SITE FOR RESIDUE LVS I 0

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OFI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu L:172 -Pro L:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OFI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OFI)

(-) Exons   (0, 0)

(no "Exon" information available for 1OFI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
 aligned with HSLU_HAEIN | P43773 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
           HSLU_HAEIN     2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
               SCOP domains d1ofia_ A: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1ofiA01 A:2-109,A:245-333 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                    -1ofiA01 A:2-109,A:24       5-333 P-loop containing nucleotide triphosphate hydrolases    --1ofiA02 A:336-440  [code=1.10.8.60, no name defined]                                                     ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhh....eeee.......hhhhhhhhhh....eeeee.hhhh.---.....hhhhhhhhhhh..--------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhheeeeehhhhh..-------..hhhhhhhhhhhhhhh.eeee..eeee.hhheeee.......hhhhhhhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhh........hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ofi A   2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE---VGKEVDSIIRDLTDSAGG--------------------------------------------------------------------------------------------------------------------------------------AIDAVEQNGIVFIDEIDKICK-------DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
                                    11        21        31        41        51        61        71        81      |  -|      101       | -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    251       261  |      -|      281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
                                                                                                                 88  92              109                                                                                                                                    244                 264     272                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:295
 aligned with HSLU_HAEIN | P43773 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
           HSLU_HAEIN     2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
               SCOP domains d1ofib_ B: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1ofiB01 B:2-109,B:245-333 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                    -1ofiB01 B:2-109,B:245       -333 P-loop containing nucleotide triphosphate hydrolases    --1ofiB02 B:336-440  [code=1.10.8.60, no name defined]                                                     ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeee.....hhhhhhhhhhhhhh..eeeee.....-------..hhhhhhhhhh...--------------------------------------------------------------------------------------------------------------------------------------hhhhhhhh.eeeeehhhhhh..-------...hhhhhhhhhhhh..eeee..eeee.hhheeeeee.....hhhhh...hhhhh.eeee....hhhhhhhhhhh...hhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh.......hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ofi B   2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT-------EVDSIIRDLTDSAGG--------------------------------------------------------------------------------------------------------------------------------------AIDAVEQNGIVFIDEIDKICKK-------VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
                                    11        21        31        41        51        61        71        81     |   -   |   101       | -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    251       261   |     - |     281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
                                                                                                                87      95           109                                                                                                                                    244                  265     273                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:296
 aligned with HSLU_HAEIN | P43773 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
           HSLU_HAEIN     2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
               SCOP domains d1ofic_ C: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1ofiC01 C:2-109,C:245-333 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                    -1ofiC01 C:2-109,C:24      5-333 P-loop containing nucleotide triphosphate hydrolases     --1ofiC02 C:336-440  [code=1.10.8.60, no name defined]                                                     ---- CATH domains
           Pfam domains (1) ---------------------------------------------------AAA-1ofiC01 C:53-107                                   --                                                                                                                                      AAA_2-1ofiC04 C:244-3      30                                                          -----ClpB_D2-small-1ofiC07 C:336-416                                                  ---------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------AAA-1ofiC02 C:53-107                                   --                                                                                                                                      AAA_2-1ofiC05 C:244-3      30                                                          -----ClpB_D2-small-1ofiC08 C:336-416                                                  ---------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------AAA-1ofiC03 C:53-107                                   --                                                                                                                                      AAA_2-1ofiC06 C:244-3      30                                                          -----ClpB_D2-small-1ofiC09 C:336-416                                                  ---------------------------- Pfam domains (3)
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhh.............hhhhhhhhhhhhh...eeeee.....-------.hhhhhhhhhhhh..--------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhheeeeehhhhhh.------....hhhhhhhhhhhhh..eeee..eeee....eeee.......hhhhhhhhhhhh...........hhhhhhhh.....hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ofi C   2 SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT-------EVDSIIRDLTDSAGG--------------------------------------------------------------------------------------------------------------------------------------AIDAVEQNGIVFIDEIDKICK------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444
                                    11        21        31        41        51        61        71        81     |   -   |   101       | -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    251       261  |    271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   
                                                                                                                87      95           109                                                                                                                                    244                 264    271                                                                                                                                                                             


Chain G from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofig_ G: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiG00 G:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee..eeeeee...eee..eeee.....eeee....eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........eeeeeee...eeeee....ee......eeeee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.........eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi G   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain H from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofih_ H: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiH00 H:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeehhh.eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...........eeeeeee..eeeeee....ee.......eee..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi H   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain I from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofii_ I: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiI00 I:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee..eeee..eeeee....eeeehhhheeeeeeehhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...........eeeeee....eeeee....ee......eeeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi I   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain L from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofil_ L: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiL00 L:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee..eeeeee...eee..eeee.....eeee....eeeeee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...........eeeee....eeeee............eeeee.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.........eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi L   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain M from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofim_ M: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiM00 M:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeee....ee..ee................eeee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.............eeee....eeee.............eeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh........eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi M   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain N from PDB  Type:PROTEIN  Length:174
 aligned with HSLV_HAEIN | P43772 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           HSLV_HAEIN     2 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 175
               SCOP domains d1ofin_ N: HslV (ClpQ) protease                                                                                                                                                SCOP domains
               CATH domains 1ofiN00 N:1-174 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                     CATH domains
           Pfam domains (1) Proteasome-1ofiN01 N:1-172                                                                                                                                                  -- Pfam domains (1)
           Pfam domains (2) Proteasome-1ofiN02 N:1-172                                                                                                                                                  -- Pfam domains (2)
           Pfam domains (3) Proteasome-1ofiN03 N:1-172                                                                                                                                                  -- Pfam domains (3)
           Pfam domains (4) Proteasome-1ofiN04 N:1-172                                                                                                                                                  -- Pfam domains (4)
           Pfam domains (5) Proteasome-1ofiN05 N:1-172                                                                                                                                                  -- Pfam domains (5)
           Pfam domains (6) Proteasome-1ofiN06 N:1-172                                                                                                                                                  -- Pfam domains (6)
         Sec.struct. author ..eeee......eeeee..eee..eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh........eeeeee.....eee...eee......eeee...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ofi N   1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELPN 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 9)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (4, 15)

Asymmetric Unit
(-)
Clan: NTN (93)
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: no clan defined [family: ClpB_D2-small] (9)

(-) Gene Ontology  (18, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (HSLU_HAEIN | P43773)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0070011    peptidase activity, acting on L-amino acid peptides    Catalysis of the hydrolysis of peptide bonds formed between L-amino acids.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043335    protein unfolding    The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0009376    HslUV protease complex    A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain G,H,I,L,M,N   (HSLV_HAEIN | P43772)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
    GO:0009376    HslUV protease complex    A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSLU_HAEIN | P43773: 1g3i 1g41 1im2 1kyi 1ofh
        HSLV_HAEIN | P43772: 1g3i 1g3k 1jjw 1kyi 1ofh

(-) Related Entries Specified in the PDB File

1g3i CRYSTAL STRUCTURE OF THE HSLUV PROTEASE- CHAPERONE COMPLEX
1g3k CRYSTAL STRUCTURE OF THE H. INFLUENZAE PROTEASE HSLV AT 1.9A RESOLUTION
1g41 CRYSTAL STRUCTURE OF HSLU HAEMOPHILUS INFLUENZAE
1im2 HSLU, HAEMOPHILUS INFLUENZAE, SELENOMETHIONINE VARIANT
1jjw STRUCTURE OF HAEMOPHILUS INFLUENZAE HSLV PROTEIN AT 1.9 ARESOLUTION
1kyi HSLUV (H. INFLUENZAE)-NLVS VINYL SULFONE INHIBITOR COMPLEX
1ofh ASYMMETRIC COMPLEX BETWEEN HSLV AND I-DOMAIN DELETED HSLU (H. INFLUENZAE)