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(-) Description

Title :  CEPHAIBOL C
 
Authors :  G. Bunkoczi, M. Schiell, L. Vertesy, G. M. Sheldrick
Date :  24 Jan 03  (Deposition) - 11 Dec 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.89
Chains :  Asym./Biol. Unit :  A
Keywords :  Ion Channel, Cephaibol, Peptaibol, Antibacterial, Antifungal, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Bunkoczi, M. Schiell, L. Vertesy, G. M. Sheldrick
Crystal Structures Of Cephaibols
J. Pept. Sci. V. 9 745 2003
PubMed-ID: 14658793  |  Reference-DOI: 10.1002/PSC.496

(-) Compounds

Molecule 1 - CEPHAIBOL C
    Chains: A
    Organism Scientific: ACREMONIUM TUBAKII
    Organism Taxid: 146077

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 16)

Asymmetric/Biological Unit (7, 16)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AIB7Mod. Amino AcidALPHA-AMINOISOBUTYRIC ACID
3DIV2Mod. Amino AcidD-ISOVALINE
4EOH2Ligand/IonETHANOL
5HYP2Mod. Amino Acid4-HYDROXYPROLINE
6NA1Ligand/IonSODIUM ION
7PHL1Mod. Amino AcidL-PHENYLALANINOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:6 , HYP A:10 , GLN A:11 , HOH A:2008 , HOH A:2009BINDING SITE FOR RESIDUE NA A 20
2AC2SOFTWAREAIB A:2 , AIB A:3 , HOH A:2001 , HOH A:2007BINDING SITE FOR RESIDUE EOH A 18
3AC3SOFTWAREACE A:0 , DIV A:12 , PRO A:15 , PHL A:16BINDING SITE FOR RESIDUE EOH A 19
4AC4SOFTWAREEOH A:18 , EOH A:19 , NA A:20 , HOH A:2008 , HOH A:2009 , HOH A:2010 , HOH A:2011BINDING SITE FOR CHAIN A OF CEPHAIBOL C

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OB7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OB7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OB7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OB7)

(-) Exons   (0, 0)

(no "Exon" information available for 1OB7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:18
                                                 
               SCOP domains d1ob7a_ A:         SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  1ob7 A  0 xFxxxxGLxxpQxxpxPx 16
                            | ||||  |9| |||| |
                            | ||||  ||| 12-AIB
                            0-ACE|  ||| |13-HYP
                              2-AIB ||| | 14-AIB
                               3-AIB||| |   16-PHL
                                4-AIB|| |     
                                 5-AIB| |     
                                    8-DIV     
                                     9-AIB    
                                     10-HYP
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1OB7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OB7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1OB7)

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  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
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  peptaibol: sticks; water (red), Na+
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  peptaibol: sticks, transparent surface; water (red), Na+(magenta): spacefill; ethanol: balls and sticks
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  peptaibol: sticks, ribbon
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  1ob7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1OB7)

(-) Related Entries Specified in the PDB File

1amt CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN
1dlz SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB
1ee7 SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES
1gq0 SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
1ih9 SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES
1joh CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
1m24 CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E
1ob4 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A
1ob6 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B
1r9u SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL