Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
 
Authors :  Structural Genomix
Date :  23 Oct 03  (Deposition) - 11 Nov 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
PubMed-ID: 16021622  |  Reference-DOI: 10.1002/PROT.20541

(-) Compounds

Molecule 1 - 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
    ChainsA, B, C, D, E
    EC Number2.1.2.11
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GenePANB, NMB0870
    Organism ScientificNEISSERIA MENINGITIDIS SEROGROUP B
    Organism Taxid491
    StrainSEROGROUP B
    SynonymKETOPANTOATE HYDROXYMETHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 80)

Asymmetric/Biological Unit (2, 80)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE75Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:61 , ASP A:62 , ARG B:61 , ASP B:62 , GOL B:274BINDING SITE FOR RESIDUE GOL A 274
2AC2SOFTWAREARG C:61 , ASP C:62 , ARG D:61 , ASP D:62 , GOL D:274BINDING SITE FOR RESIDUE GOL C 274
3AC3SOFTWAREARG A:61 , ASP A:62 , GOL A:274 , ARG B:61 , ASP B:62BINDING SITE FOR RESIDUE GOL B 274
4AC4SOFTWAREARG C:61 , ASP C:62 , GOL C:274 , ARG D:61 , ASP D:62BINDING SITE FOR RESIDUE GOL D 274
5AC5SOFTWAREARG E:61 , ASP E:62 , TYR E:65BINDING SITE FOR RESIDUE GOL E 274

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1O66)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Phe A:254 -Pro A:255
2Phe B:254 -Pro B:255
3Phe C:254 -Pro C:255
4Phe D:254 -Pro D:255
5Phe E:254 -Pro E:255

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1O66)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1O66)

(-) Exons   (0, 0)

(no "Exon" information available for 1O66)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:249
 aligned with PANB_NEIMB | Q9JZW6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
           PANB_NEIMB     1 MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPAAEHI 260
               SCOP domains d1o66a_ A: Ketopantoate hydroxymethyltransferase PanB                                                                                                                                                                                                                SCOP domains
               CATH domains 1o66A00 A:1-260 Phosphoenolpyruvate-binding domains                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhh..-----------hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o66 A   1 LITVNTLQKmKAAGEKIAmLTAYESSFAALmDDAGVEmLLVGDSLGmAVQGRKSTLPVSLRDmCYHTECVARGAKNAmIVSDLPFGAYQQSKEQAFAAAAELmAAGAHmVKLEGGVWmAETTEFLQmRGIPVCAHIGLTPQSVFA-----------KAQALLNDAKAHDDAGAAVVLmECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVmHDmLGIFPGKTAKFVKNFmQGHDSVQAAVRAYVAEVKAKTFPAAEHI 260
                                    10        20        30|      |40      | 50        60  |     70       |80        90       100  |    110       120      |130       140    |    -      |160       170       180       190       200       210  |  | 220       230 |     240       250       260
                                    10-MSE   19-MSE      31-MSE 38-MSE   47-MSE          63-MSE         78-MSE                  103-MSE |      118-MSE  127-MSE           145         157                  178-MSE                            213-MSE            232-MSE                        
                                                                                                                                      109-MSE                                                                                                    216-MSE                                        

Chain B from PDB  Type:PROTEIN  Length:248
 aligned with PANB_NEIMB | Q9JZW6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:257
                             1                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
           PANB_NEIMB     - -MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPA 256
               SCOP domains d1o66b_ B: Ketopantoate hydroxymethyltransferase PanB                                                                                                                                                                                                             SCOP domains
               CATH domains 1o66B00 B:0-256 Phosphoenolpyruvate-binding domains                                                                                                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhh..---------hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o66 B   0 SLITVNTLQKmKAAGEKIAmLTAYESSFAALmDDAGVEmLLVGDSLGmAVQGRKSTLPVSLRDmCYHTECVARGAKNAmIVSDLPFGAYQQSKEQAFAAAAELmAAGAHmVKLEGGVWmAETTEFLQmRGIPVCAHIGLTPQSVFA---------GGKAQALLNDAKAHDDAGAAVVLmECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVmHDmLGIFPGKTAKFVKNFmQGHDSVQAAVRAYVAEVKAKTFPA 256
                                     9|       19        29 |      39       |49        59   |    69        79        89        99   |   109       119       129       139     |   -     | 159       169       179       189       199       209   |  |219       229  |    239       249       
                                     10-MSE   19-MSE      31-MSE 38-MSE   47-MSE          63-MSE         78-MSE                  103-MSE |      118-MSE  127-MSE           145       155                    178-MSE                            213-MSE            232-MSE                    
                                                                                                                                       109-MSE                                                                                                    216-MSE                                    

Chain C from PDB  Type:PROTEIN  Length:246
 aligned with PANB_NEIMB | Q9JZW6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:257
                             1                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
           PANB_NEIMB     - -MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPA 256
               SCOP domains d1o66c_ C: Ketopantoate hydroxymethyltransferase PanB                                                                                                                                                                                                             SCOP domains
               CATH domains 1o66C00 C:0-256 Phosphoenolpyruvate-binding domains                                                                                                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhh..-----------hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o66 C   0 SLITVNTLQKmKAAGEKIAmLTAYESSFAALmDDAGVEmLLVGDSLGmAVQGRKSTLPVSLRDmCYHTECVARGAKNAmIVSDLPFGAYQQSKEQAFAAAAELmAAGAHmVKLEGGVWmAETTEFLQmRGIPVCAHIGLTPQSVFA-----------KAQALLNDAKAHDDAGAAVVLmECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVmHDmLGIFPGKTAKFVKNFmQGHDSVQAAVRAYVAEVKAKTFPA 256
                                     9|       19        29 |      39       |49        59   |    69        79        89        99   |   109       119       129       139     |   -       159       169       179       189       199       209   |  |219       229  |    239       249       
                                     10-MSE   19-MSE      31-MSE 38-MSE   47-MSE          63-MSE         78-MSE                  103-MSE |      118-MSE  127-MSE           145         157                  178-MSE                            213-MSE            232-MSE                    
                                                                                                                                       109-MSE                                                                                                    216-MSE                                    

Chain D from PDB  Type:PROTEIN  Length:249
 aligned with PANB_NEIMB | Q9JZW6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
           PANB_NEIMB     1 MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPAAEH 259
               SCOP domains d1o66d_ D: Ketopantoate hydroxymethyltransferase PanB                                                                                                                                                                                                               SCOP domains
               CATH domains 1o66D00 D:1-259 Phosphoenolpyruvate-binding domains                                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhh..----------hhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o66 D   1 LITVNTLQKmKAAGEKIAmLTAYESSFAALmDDAGVEmLLVGDSLGmAVQGRKSTLPVSLRDmCYHTECVARGAKNAmIVSDLPFGAYQQSKEQAFAAAAELmAAGAHmVKLEGGVWmAETTEFLQmRGIPVCAHIGLTPQSVFA----------GKAQALLNDAKAHDDAGAAVVLmECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVmHDmLGIFPGKTAKFVKNFmQGHDSVQAAVRAYVAEVKAKTFPAAEH 259
                                    10        20        30|      |40      | 50        60  |     70       |80        90       100  |    110       120      |130       140    |    -     | 160       170       180       190       200       210  |  | 220       230 |     240       250         
                                    10-MSE   19-MSE      31-MSE 38-MSE   47-MSE          63-MSE         78-MSE                  103-MSE |      118-MSE  127-MSE           145        156                   178-MSE                            213-MSE            232-MSE                       
                                                                                                                                      109-MSE                                                                                                    216-MSE                                       

Chain E from PDB  Type:PROTEIN  Length:237
 aligned with PANB_NEIMB | Q9JZW6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:258
                             1                                                                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249        
           PANB_NEIMB     - -MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPAA 257
               SCOP domains d1o66e_ E: Ketopantoate hydroxymethyltransferase PanB                                                                                                                                                                                                              SCOP domains
               CATH domains 1o66E00 E:0-257 Phosphoenolpyruvate-binding domains                                                                                                                                                                                                                CATH domains
           Pfam domains (1) --Pantoate_transf-1o66E01 E:2-257                                                                                                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) --Pantoate_transf-1o66E02 E:2-257                                                                                                                                                                                                                                  Pfam domains (2)
           Pfam domains (3) --Pantoate_transf-1o66E03 E:2-257                                                                                                                                                                                                                                  Pfam domains (3)
           Pfam domains (4) --Pantoate_transf-1o66E04 E:2-257                                                                                                                                                                                                                                  Pfam domains (4)
           Pfam domains (5) --Pantoate_transf-1o66E05 E:2-257                                                                                                                                                                                                                                  Pfam domains (5)
         Sec.struct. author ...hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhhh-..eeeee........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeee.--------------------hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1o66 E   0 SLITVNTLQKmKAAGEKIAmLTAYESSFAALmDDAGVEmLLVGDSLGmAVQGRKSTLPVSLRDmCYHTECVARGA-NAmIVSDLPFGAYQQSKEQAFAAAAELmAAGAHmVKLEGGVWmAETTEFLQmRGIPVCAHIG--------------------AQALLNDAKAHDDAGAAVVLmECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVmHDmLGIFPGKTAKFVKNFmQGHDSVQAAVRAYVAEVKAKTFPAA 257
                                     9|       19        29 |      39       |49        59   |    69    | | 79        89        99   |   109       119       129       | -         -       159       169       179       189       199       209   |  |219       229  |    239       249        
                                     10-MSE   19-MSE      31-MSE 38-MSE   47-MSE          63-MSE     74 | |                      103-MSE |      118-MSE  127-MSE   137                  158                 178-MSE                            213-MSE            232-MSE                     
                                                                                                       76 |                            109-MSE                                                                                                    216-MSE                                     
                                                                                                         78-MSE                                                                                                                                                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: PK_TIM (63)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (PANB_NEIMB | Q9JZW6)
molecular function
    GO:0003864    3-methyl-2-oxobutanoate hydroxymethyltransferase activity    Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0015940    pantothenate biosynthetic process    The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Phe A:254 - Pro A:255   [ RasMol ]  
    Phe B:254 - Pro B:255   [ RasMol ]  
    Phe C:254 - Pro C:255   [ RasMol ]  
    Phe D:254 - Pro D:255   [ RasMol ]  
    Phe E:254 - Pro E:255   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1o66
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PANB_NEIMB | Q9JZW6
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.1.2.11
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PANB_NEIMB | Q9JZW6
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PANB_NEIMB | Q9JZW61o68

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1O66)