1O5W - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE STRUCTURE BASIS OF SPECIFIC RECOGNITIONS FOR SUBSTRATES AND INHIBITORS OF RAT MONOAMINE OXIDASE A

Authors :   J. Ma, M. Yoshimura, E. Yamashita, A. Nakagawa, A. Ito, T. Tsukihara

Date :   06 Oct 03 (Deposition) - 20 Apr 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Ma, M. Yoshimura, E. Yamashita, A. Nakagawa, A. Ito, T. Tsukihara
Structure Of Rat Monoamine Oxidase A And Its Specific Recognitions For Substrates And Inhibitors.
J. Mol. Biol. V. 338 103 2004
PubMed-ID: 15050826 | Reference-DOI: 10.1016/J.JMB.2004.02.032
(for further references see the PDB file header)

Molecule 1 - AMINE OXIDASE [FLAVIN-CONTAINING] A
	Chains	:	A, B, C, D
	EC Number	:	1.4.3.4
	Engineered	:	YES
	Expression System	:	SACCHAROMYCES CEREVISIAE
	Expression System Common	:	BAKER'S YEAST
	Expression System Plasmid	:	YEP51
	Expression System Strain	:	BJ2168
	Expression System Taxid	:	4932
	Expression System Vector Type	:	PLASMID
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	MONOAMINE OXIDASE, MAO-A

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MLG	4	Ligand/Ion	N-[3-(2,4-DICHLOROPHENOXY)PROPYL]-N-METHYL-N-PROP-2-YNYLAMINE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MLG	2	Ligand/Ion	N-[3-(2,4-DICHLOROPHENOXY)PROPYL]-N-METHYL-N-PROP-2-YNYLAMINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MLG	2	Ligand/Ion	N-[3-(2,4-DICHLOROPHENOXY)PROPYL]-N-METHYL-N-PROP-2-YNYLAMINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:19 , GLY A:20 , GLY A:22 , ILE A:23 , SER A:24 , GLU A:43 , ALA A:44 , ARG A:45 , GLY A:49 , GLY A:50 , ARG A:51 , GLY A:66 , GLY A:67 , ALA A:68 , TYR A:69 , PRO A:243 , VAL A:244 , ALA A:272 , ILE A:273 , TRP A:397 , TYR A:402 , CYS A:406 , TYR A:407 , GLY A:434 , THR A:435 , GLY A:443 , TYR A:444 , MET A:445 , ALA A:448 , MLG A:709	BINDING SITE FOR RESIDUE FAD A 652
2	AC2	SOFTWARE	ILE A:180 , PHE A:208 , GLN A:215 , CYS A:323 , ILE A:335 , THR A:336 , LEU A:337 , TYR A:407 , TYR A:444 , FAD A:652	BINDING SITE FOR RESIDUE MLG A 709
3	AC3	SOFTWARE	ILE B:1019 , GLY B:1020 , GLY B:1021 , GLY B:1022 , ILE B:1023 , SER B:1024 , GLU B:1043 , ALA B:1044 , ARG B:1045 , GLY B:1049 , GLY B:1050 , ARG B:1051 , GLY B:1066 , GLY B:1067 , ALA B:1068 , TYR B:1069 , PRO B:1243 , VAL B:1244 , ALA B:1272 , ILE B:1273 , TYR B:1402 , CYS B:1406 , TYR B:1407 , GLY B:1434 , THR B:1435 , GLY B:1443 , TYR B:1444 , MET B:1445 , ALA B:1448 , MLG B:1709	BINDING SITE FOR RESIDUE FAD B 1652
4	AC4	SOFTWARE	ILE B:1180 , PHE B:1208 , GLN B:1215 , CYS B:1323 , ILE B:1325 , ILE B:1335 , THR B:1336 , LEU B:1337 , TYR B:1407 , TYR B:1444 , FAD B:1652	BINDING SITE FOR RESIDUE MLG B 1709
5	AC5	SOFTWARE	ILE C:2019 , GLY C:2020 , GLY C:2021 , GLY C:2022 , ILE C:2023 , SER C:2024 , GLU C:2043 , ALA C:2044 , ARG C:2045 , GLY C:2049 , GLY C:2050 , ARG C:2051 , GLY C:2066 , GLY C:2067 , ALA C:2068 , TYR C:2069 , PRO C:2243 , VAL C:2244 , ALA C:2272 , ILE C:2273 , TRP C:2397 , TYR C:2402 , CYS C:2406 , TYR C:2407 , GLY C:2434 , THR C:2435 , GLY C:2443 , TYR C:2444 , MET C:2445 , MLG C:2709	BINDING SITE FOR RESIDUE FAD C 2652
6	AC6	SOFTWARE	ILE C:2180 , PHE C:2208 , GLN C:2215 , CYS C:2323 , ILE C:2325 , ILE C:2335 , THR C:2336 , LEU C:2337 , TYR C:2407 , TYR C:2444 , FAD C:2652	BINDING SITE FOR RESIDUE MLG C 2709
7	AC7	SOFTWARE	ILE D:3019 , GLY D:3020 , GLY D:3022 , ILE D:3023 , SER D:3024 , GLU D:3043 , ALA D:3044 , ARG D:3045 , GLY D:3050 , ARG D:3051 , GLY D:3066 , GLY D:3067 , ALA D:3068 , TYR D:3069 , VAL D:3244 , ALA D:3272 , ILE D:3273 , TRP D:3397 , TYR D:3402 , CYS D:3406 , TYR D:3407 , GLY D:3434 , THR D:3435 , GLY D:3443 , TYR D:3444 , MET D:3445 , ALA D:3448 , MLG D:3709	BINDING SITE FOR RESIDUE FAD D 3652
8	AC8	SOFTWARE	ILE D:3180 , PHE D:3208 , GLN D:3215 , CYS D:3323 , ILE D:3325 , ILE D:3335 , THR D:3336 , LEU D:3337 , TYR D:3407 , TYR D:3444 , FAD D:3652	BINDING SITE FOR RESIDUE MLG D 3709

(no "SS Bond" information available for 1O5W)

(no "Cis Peptide Bond" information available for 1O5W)

(no "SAP(SNP)/Variant" information available for 1O5W)

(no "PROSITE Motif" information available for 1O5W)

(no "Exon" information available for 1O5W)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:511
 aligned with AOFA_RAT | P21396 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:511
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519 
            AOFA_RAT     10 AGHMFDVGLIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRQAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLCFVLYK  520
               SCOP domains d1o5wa1 A:10-298,A:411-520 Monoamine oxidase B                                                                                                                                                                                                                                                   d1o5wa2 A:299-410 Monoamine oxidase B                                                                           d1o5wa1 A:10-298,A:411-520 Monoamine oxidase B                                                                 SCOP domains
               CATH domains 1o5wA01                                  ---------------------1o5wA01         ------------------------------------------------------------------------------------------------------------------------------------1o5wA01 A:10-50,A:72-87,A:220-298,A:412-472  [code=3.50.50.60, no name defined]-----------------------------------------------------------------------------------------------------------------1o5wA01 A:10-50,A:72-87,A:220-298,A:412-472                  ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee...........ee.......ee.........hhhhhhhhhhh...eee.....eeeeee...eeee........hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......eee....hhhhhhhhhhhhh.ee....eeeee.....eeeee....eeeeeeeee..hhhhhhhhee....hhhhhhhh.......eeeeeee.....hhhh.eeeeeeee.......eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..................hhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhh..........................hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1o5w A   10 AGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLCFVLYK  520
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519

Chain B from PDB  Type:PROTEIN  Length:503
 aligned with AOFA_RAT | P21396 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:503
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509   
            AOFA_RAT     10 AGHMFDVGLIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRQAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVA  512
               SCOP domains d1o5wb1 B:1010-1298,B:1411-1512 Monoamine oxidase B                                                                                                                                                                                                                                              d1o5wb2 B:1299-1410 Monoamine oxidase B                                                                         d1o5wb1 B:1010-1298,B:1411-1512 Monoamine oxidase B                                                    SCOP domains
               CATH domains 1o5wB01                                  1o5wB02              1o5wB01         1o5wB02                      1o5wB03 B:1117-1208 Guanine Nucleotide Dissociation Inhibitor, domain 1                     1o5wB02    1o5wB01 B:1010-1050,B:1072-1087,B:1220-1298,B:1412-1472                        1o5wB02 B:1051-1071,B:1088-1116,B:1209-1219,B:1299-1411  [code=3.90.660.10, no name defined]                     1o5wB01 B:1010-1050,B:1072-1087,B:1220-1298,B:1412-1472      ---------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee...........ee.......ee.........hhhhhhhhhhh..eeee.....eeeeee...eeee........hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh.ee....eeeee.....eeeee....eeeeeeeee..hhhhhhhhee....hhhhhhhh.......eeeeeee.....hhhh.eeeeeeee.......eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..................hhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhh..........................hhhhhhh.hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1o5w B 1010 AGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVA 1512
                                  1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479      1489      1499      1509

Chain C from PDB  Type:PROTEIN  Length:512
 aligned with AOFA_RAT | P21396 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:512
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519  
            AOFA_RAT     10 AGHMFDVGLIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRQAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLCFVLYKI  521
               SCOP domains d1o5wc1 C:2010-2298,C:2411-2521 Monoamine oxidase B                                                                                                                                                                                                                                              d1o5wc2 C:2299-2410 Monoamine oxidase B                                                                         d1o5wc1 C:2010-2298,C:2411-2521 Monoamine oxidase B                                                             SCOP domains
               CATH domains 1o5wC01                                  ---------------------1o5wC01         ------------------------------------------------------------------------------------------------------------------------------------1o5wC01 C:2010-2050,C:2072-2087,C:2220-2298,C:2412-2472                        -----------------------------------------------------------------------------------------------------------------1o5wC01 C:2010-2050,C:2072-2087,C:2220-2298,C:2412-2472      ------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee...........ee.......ee.........hhhhhhhhhhh..eeee.....eeeeee...eeee........hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh.ee....eeeee.....eeeee....eeeeeeeee..hhhhhhhhee....hhhhhhhh.......eeeeeee.....hhhh.eeeeeeee.......eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..................hhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhh..........................hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1o5w C 2010 AGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLCFVLYKI 2521
                                  2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      2229      2239      2249      2259      2269      2279      2289      2299      2309      2319      2329      2339      2349      2359      2369      2379      2389      2399      2409      2419      2429      2439      2449      2459      2469      2479      2489      2499      2509      2519

Chain D from PDB  Type:PROTEIN  Length:506
 aligned with AOFA_RAT | P21396 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:506
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509      
            AOFA_RAT     10 AGHMFDVGLIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRQAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLC  515
               SCOP domains d1o5wd1 D:3010-3298,D:3411-3515 Monoamine oxidase B                                                                                                                                                                                                                                              d1o5wd2 D:3299-3410 Monoamine oxidase B                                                                         d1o5wd1 D:3010-3298,D:3411-3515 Monoamine oxidase B                                                       SCOP domains
               CATH domains 1o5wD01                                  ---------------------1o5wD01         ------------------------------------------------------------------------------------------------------------------------------------1o5wD01 D:3010-3050,D:3072-3087,D:3220-3298,D:3412-3472                        -----------------------------------------------------------------------------------------------------------------1o5wD01 D:3010-3050,D:3072-3087,D:3220-3298,D:3412-3472      ------------------------------------------- CATH domains
           Pfam domains (1) -------------Amino_oxidase-1o5wD01 D:3023-3460                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------Amino_oxidase-1o5wD02 D:3023-3460                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------Amino_oxidase-1o5wD03 D:3023-3460                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------Amino_oxidase-1o5wD04 D:3023-3460                                                                                                                                                                                                                                                                                                                                                                                                                     ------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee...........ee.......ee.........hhhhhhhhhhh..eeee.....eeeeee...eeee........hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh.ee....eeeee.....eeeee....eeeeeeeee..hhhhhhhhee....hhhhhhhh.......eeeeeee...hhhhhh.eeeeeeee.......eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeee..................hhhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhhh..........................hhhhhhh.hhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1o5w D 3010 AGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGVSTSVALLC 3515
                                  3019      3029      3039      3049      3059      3069      3079      3089      3099      3109      3119      3129      3139      3149      3159      3169      3179      3189      3199      3209      3219      3229      3239      3249      3259      3269      3279      3289      3299      3309      3319      3329      3339      3349      3359      3369      3379      3389      3399      3409      3419      3429      3439      3449      3459      3469      3479      3489      3499      3509

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FAD-linked reductases, C-terminal domain (181)

Superfamily: FAD-linked reductases, C-terminal domain (181)

Family: L-aminoacid/polyamine oxidase (66)

Protein domain: Monoamine oxidase B (38)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d1o5wa2	A:299-410
1b	d1o5wb2	B:1299-1410
1c	d1o5wc2	C:2299-2410
1d	d1o5wd2	D:3299-3410

Class: Alpha and beta proteins (a/b) (23833)

Fold: FAD/NAD(P)-binding domain (331)

Superfamily: FAD/NAD(P)-binding domain (331)

Family: FAD-linked reductases, N-terminal domain (156)

Protein domain: Monoamine oxidase B (38)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

2a	d1o5wa1	A:10-298,A:411-520
2b	d1o5wb1	B:1010-1298,B:1411-1512
2c	d1o5wc1	C:2010-2298,C:2411-2521
2d	d1o5wd1	D:3010-3298,D:3411-3515

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Norway rat (Rattus norvegicus) (4)

1a	1o5wA01	A:10-50,A:72-87,A:220-298,A:412-472
1b	1o5wB01	B:1010-1050,B:1072-1087,B:1220-1298,B:1412-1472
1c	1o5wC01	C:2010-2050,C:2072-2087,C:2220-2298,C:2412-2472
1d	1o5wD01	D:3010-3050,D:3072-3087,D:3220-3298,D:3412-3472

Architecture: Alpha-Beta Complex (3881)

Topology: Polyamine Oxidase; Chain A, domain 2 (62)

Homologous Superfamily: [code=3.90.660.10, no name defined] (61)

Norway rat (Rattus norvegicus) (1)

1o5wB02

B:1051-1071,B:1088-1116,B:1209-1219,B:1299-1411

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Guanine Nucleotide Dissociation Inhibitor; domain 1 (50)

Homologous Superfamily: Guanine Nucleotide Dissociation Inhibitor, domain 1 (50)

Norway rat (Rattus norvegicus) (4)

1o5wB03

B:1117-1208

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Amino_oxidase (60)

Rattus norvegicus (Rat) (1)

1a	Amino_oxidase-1o5wD01	D:3023-3460
1b	Amino_oxidase-1o5wD02	D:3023-3460
1c	Amino_oxidase-1o5wD03	D:3023-3460
1d	Amino_oxidase-1o5wD04	D:3023-3460

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AOFA_RAT | P21396)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008131	primary amine oxidase activity	Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
	GO:0051378	serotonin binding	Interacting selectively and non-covalently with serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
biological process
	GO:0042424	catecholamine catabolic process	The chemical reactions and pathways resulting in the breakdown of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
	GO:0006584	catecholamine metabolic process	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
	GO:0042135	neurotransmitter catabolic process	The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0042443	phenylethylamine metabolic process	The chemical reactions and pathways involving phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.
	GO:0042428	serotonin metabolic process	The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005741	mitochondrial outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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	1o5w
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Description

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Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

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