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(-) Description

Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Jul 03  (Deposition) - 29 Jul 03  (Release) - 13 Jul 11  (Revision)
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pin (Pilt N-Terminus) Domain, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  I. Levin, R. Schwarzenbacher, R. Page, P. Abdubek, E. Ambing, T. Biorac, L. S. Brinen, J. Campbell, J. M. Canaves, H. J. Chiu, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, R. Floyd, A. Godzik, C. Grittini, S. K. Grzechnik, E. Hampton, L. Jaroszewski, C. Karlak, H. E. Klock, E. Koesema, J. S. Kovarik, A. Kreusch, P. Kuhn, S. A. Lesley D. Mcmullan, T. M. Mcphillips, M. D. Miller, A. Morse, K. Moy, J. Ouyang K. Quijano, R. Reyes, F. Rezezadeh, A. Robb, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, F. Von Delft, X. Wang, B. West, G. Wolf, Q. Xu, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of A Pin (Pilt N-Terminus) Domain (Af0591 From Archaeoglobus Fulgidus At 1. 90 A Resolution
Proteins V. 56 404 2004
PubMed-ID: 15211526  |  Reference-DOI: 10.1002/PROT.20090

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism Taxid2234

 Structural Features

(-) Chains, Units

Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name

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(-) SS Bonds  (1, 1)

Asymmetric Unit
1A:13 -A:100

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:125
 aligned with VAPC9_ARCFU | O29664 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:125
                                    19        29        39        49        59        69        79        89        99       109       119       129     
               SCOP domains d1o4wa_ A: Hypothetical protein AF0591                                                                                        SCOP domains
               CATH domains 1o4wA00 A:10-134 5'-nuclease                                                                                                  CATH domains
               Pfam domains ----PIN-1o4wA01 A:14-115                                                                                  ------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhh.hhhhhhhhh.eeeeeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.eee..hhhhhhhhhhh...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                                    19  |     29        39        49        59        69        79        89        99       109       119       129     
                                       22-MSE                              58-MSE                                                                        

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
Clan: PIN (27)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (VAPC9_ARCFU | O29664)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
    GO:0004540    ribonuclease activity    Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.


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