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(-) Description

Title :  DOCKING MODEL FOR MAT AND ACP
 
Authors :  A. T. Keatinge-Clay, A. A. Shelat, D. F. Savage, S. Tsai, L. J. W. Miercke, J. D. O'Connell Iii, C. Khosla, R. M Stroud
Date :  15 Jan 03  (Deposition) - 28 Jan 03  (Release) - 11 Feb 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Mat-Acp Interface, Acp Docking Site (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. T. Keatinge-Clay, A. A. Shelat, D. F. Savage, S. Tsai, L. J. W. Miercke, J. D. O'Connell Iii, C. Khosla, R. M. Stroud
Catalysis, Specificity, And Acp Docking Site Of Streptomyces Coelicolor Malonyl-Coa:Acp Transacylase
Structure V. 11 147 2003
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALONYL COA:ACYL CARRIER PROTEIN MALONYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.39
    Engineered: YES
    Organism Common: 2
    Organism Scientific: STREPTOMYCES COELICOLOR A3
 
Molecule 2 - ACTINORHODIN POLYKETIDE SYNTHASE ACYL CARRIER PROTEIN
    Chains: B
    EC Number: 2.7.8.7
    Engineered: YES
    Fragment: ACYL CARRIER PROTEIN
    Gene: SCO5089 OR SCBAC28G1.15
    Organism Scientific: STREPTOMYCES COELICOLOR
    Synonym: ACTI ORF3

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NNZ)

(-) Sites  (0, 0)

(no "Site" information available for 1NNZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NNZ)

(-) Cis Peptide Bonds  (2, 2)

Theoretical Model
No.Residues
1Gly A:87 -Gly A:87
2Cys A:276 -Pro A:277

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NNZ)

(-) PROSITE Motifs  (2, 2)

Theoretical Model (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARRIERPS50075 Carrier protein (CP) domain profile.ACPX_STRCO4-82  1B:4-82
2PHOSPHOPANTETHEINEPS00012 Phosphopantetheine attachment site.ACPX_STRCO37-52  1B:37-52

(-) Exons   (0, 0)

(no "Exon" information available for 1NNZ)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..........hhhhhh..hhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhh.........eee......ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nnz A   1 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLLVAAGILSAAALGTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPDDLDAARELVAEHT 314
                                    10        20        30        40        50        60        70     || 90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                      76|                                                                                                                                                                                                                                   
                                                                                                       87                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:86
 aligned with ACPX_STRCO | Q02054 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:86
                                    10        20        30        40        50        60        70        80      
           ACPX_STRCO     1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA  86
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh.............hhhhhhh..hhhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---CARRIER  PDB: B:4-82 UniProt: 4-82                                             ---- PROSITE (1)
                PROSITE (2) ------------------------------------PHOSPHOPANTETHEI---------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 1nnz B   1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEAA  86
                                    10        20        30        40        50        60        70        80
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1NNZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1NNZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1NNZ)

(-) Gene Ontology  (1, 1)

Theoretical Model(hide GO term definitions)
Chain B   (ACPX_STRCO | Q02054)
biological process
    GO:0017000    antibiotic biosynthetic process    The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.

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  Sites
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  Cis Peptide Bonds
    Cys A:276 - Pro A:277   [ RasMol ]  
    Gly A:87 - Gly A:87   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACPX_STRCO | Q02054: 1af8 2af8 2k0x 2k0y 2kg6 2kg8 2kg9 2kga 2kgc 2kgd 2kge 2mvu 2mvv

(-) Related Entries Specified in the PDB File

1nm2 MALONYL-COA:ACP TRANSACYLASE