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(-) Description

Title :  HYPOTHETICAL PROTEIN FROM PYROCOCCUS FURIOSUS PFU-1218608
 
Authors :  Southeast Collaboratory For Structural Genomics (Secsg)
Date :  14 Jan 03  (Deposition) - 11 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Hypothetical Protein, Pyrococcus Furiosus, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Southeast Collaboratory For Structural Genomics
Southeast Collaboratory For Structural Genomics: Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
2PT4Ligand/IonPLATINUM (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PT-1Ligand/IonPLATINUM (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PT-1Ligand/IonPLATINUM (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:79BINDING SITE FOR RESIDUE PT A 301
2AC2SOFTWAREMET A:183BINDING SITE FOR RESIDUE PT A 302
3AC3SOFTWARELYS A:166 , TYR A:168 , TYR A:186BINDING SITE FOR RESIDUE NA A 303
4AC4SOFTWAREMET B:79BINDING SITE FOR RESIDUE PT B 301
5AC5SOFTWAREMET A:183 , MET B:183BINDING SITE FOR RESIDUE PT B 302
6AC6SOFTWARELYS B:166 , TYR B:168 , TYR B:186BINDING SITE FOR RESIDUE NA B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NNW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:41 -Asn A:42
2Gly B:41 -Asn B:42

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NNW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NNW)

(-) Exons   (0, 0)

(no "Exon" information available for 1NNW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
 aligned with Q8U1C6_PYRFU | Q8U1C6 from UniProtKB/TrEMBL  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
         Q8U1C6_PYRFU     2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVEYDKKIIEERIRAEGLPEEIIKILYHGGRP 252
               SCOP domains d1nnwa_ A: Hypothetical protein PF1291                                                                                                                                                                                                                      SCOP domains
               CATH domains 1nnwA00 A:2-252  [code=3.60.21.10, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhhhh.eeee.hhhhhhhhhh......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeeee................hhhhhhhhhhhhh...eeee.....eeeeee..eeeeee............eeeeeee.....eeeeee...hhhhhhhhhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nnw A   2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVEYDKKIIEERIRAEGLPEEIIKILYHGGRP 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q8U1C6_PYRFU | Q8U1C6 from UniProtKB/TrEMBL  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         Q8U1C6_PYRFU     1 MVYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVEYDKKIIEERIRAEGLPEEIIKILYHGGRP 252
               SCOP domains d1nnwb_ B: Hypothetical protein PF1291                                                                                                                                                                                                                       SCOP domains
               CATH domains 1nnwB00 B:1-252  [code=3.60.21.10, no name defined]                                                                                                                                                                                                          CATH domains
           Pfam domains (1) -Metallophos_2-1nnwB01 B:2-215                                                                                                                                                                                         ------------------------------------- Pfam domains (1)
           Pfam domains (2) -Metallophos_2-1nnwB02 B:2-215                                                                                                                                                                                         ------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhhhh.eee..hhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee..eeeeee................hhhhhhhhhhhhh...eeee.....eeeeee..eeeeee............eeeeeee.....eeeeee..hhhhhhhhhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1nnw B   1 MVYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVEYDKKIIEERIRAEGLPEEIIKILYHGGRP 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Calcineurin (56)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1NNW)

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