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(-) Description

Title :  AZOBENZENE REDUCTASE FROM BACILLUS SUBTILIS
 
Authors :  M. E. Cuff, Y. Kim, L. Maj, F. Collart, A. Joachimiak, Midwest Center F Structural Genomics (Mcsg)
Date :  13 Jan 03  (Deposition) - 29 Jul 03  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  1
Biol. Unit 1:  1  (2x)
Keywords :  Azobenzene Reductase, Azoreductase, Structural Genomics, Flavoproteins, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, Y. Kim, L. Maj, F. Collart, A. Joachimiak
Azobenzene Reductase From Bacillus Subtilis
To Be Published 2003
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YHDA
    Chains: 1
    EC Number: 1.7.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YHDA
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Other Details: APC1167
    Synonym: AZOBENZENE REDUCTASE, AZOREDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : 1
Biological Unit 1 (2x): 1

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR 1:9 , ARG 1:11 , GLY 1:14 , ARG 1:15 , THR 1:16 , PRO 1:72 , GLU 1:73 , TYR 1:74 , HIS 1:75 , SER 1:76 , ASP 1:87 , VAL 1:104 , ALA 1:105 , GLY 1:106 , GLY 1:110 , HOH 1:219BINDING SITE FOR RESIDUE FMN 1 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NNI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NNI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NNI)

(-) Exons   (0, 0)

(no "Exon" information available for 1NNI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:171
 aligned with AZR_BACSU | O07529 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
            AZR_BACSU     1 MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGINALNNMRTVMRGVYANVIPKQLVLDPVHIDVENATVAENIKESIKELVEELSMFAKAGN 171
               SCOP domains d1nni1_ 1: Azobenzene reductase                                                                                                                                             SCOP domains
               CATH domains -1nni100 1:2-171  [code=3.40.50.360, no name defined]                                                                                                                       CATH domains
               Pfam domains FMN_red-1nni101 1:1-141                                                                                                                      ------------------------------ Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhh..ee....eeehhh.eehhhheehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nni 1   1 mNmLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGmSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGINALNNmRTVmRGVYANVIPKQLVLDPVHIDVENATVAENIKESIKELVEELSmFAKAGN 171
                            | |     10        20        30        40        50        60        70       |80        90       100       110       120 |     130       140       150       160    |  170 
                            | |                                                                         78-MSE                                 118-MSE                                        165-MSE  
                            1-MSE                                                                                                                  122-MSE                                             
                              3-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Flavoprotein (71)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain 1   (AZR_BACSU | O07529)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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UniProtKB/Swiss-Prot
        AZR_BACSU | O07529: 2gsw 3gfq 3gfr 3gfs

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