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(-) Description

Title :  STRUCTURE OF THE MESJ PP-ATPASE FROM ESCHERICHIA COLI
 
Authors :  M. Gu, T. Burling, C. D. Lima, S. K. Burley, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  21 Dec 02  (Deposition) - 07 Jan 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Atpase, Pp-Type, Putative Cell Cycle Protein, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Gu, T. Burling, C. D. Lima
Structure Of The Mesj Pp-Atpase From Escherichia Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CELL CYCLE PROTEIN MESJ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: DL41 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: T7
    Gene: MESJ
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1NI5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NI5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NI5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NI5)

(-) Exons   (0, 0)

(no "Exon" information available for 1NI5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:433
 aligned with TILS_ECOLI | P52097 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:433
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429   
           TILS_ECOLI     - -MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS 432
               SCOP domains d1ni5a1 A:0-226 tRNA-Ile-lysidine synthetase, TilS, N-terminal domain                                                                                                                                                              d1ni5a4 A:227-314 tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain          d1ni5a3 A:315-432 tRNA-Ile-lysidine synthetase, TilS, C-terminal domain                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------ATP_bind_3-1ni5A01 A:14-193                                                                                                                                                         -----------------------------------------------TilS-1ni5A03 A:241-309                                               ----------------------------------------------TilS_C-1ni5A02 A:356-427                                                ----- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh.....eeeeeee......hhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhh.....hhhhh...eeee..eeee.hhhh.hhhhhhhhhhhh........hhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee.hhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...hhhhh.eeee..eeeee...eeeeee........eee.......ee......eeeeee............eeee.....ee........eehhhhhhhhh.hhhhh....eeee..eeeee...ee.hhhh......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ni5 A   0 SmTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAmAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQGTLQIVPmLAmSDARRAAIIRRWLAGQNAPmPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS 432
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429   
                             |                                                                                                                                        140-MSE                                                                                                   246-MSE                269-MSE                                                                                                                                                               
                             1-MSE                                                                                                                                                                                                                                                 249-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1NI5)

(-) Pfam Domains  (3, 3)

Asymmetric Unit
(-)
Clan: HUP (230)
(-)
Clan: PheT-TilS (7)
(-)
Clan: no clan defined [family: TilS] (1)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A   (TILS_ECOLI | P52097)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0016879    ligase activity, forming carbon-nitrogen bonds    Catalysis of the joining of two molecules, or two groups within a single molecule, via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0032267    tRNA(Ile)-lysidine synthase activity    Catalysis of the ligation of lysine onto the cytidine residue present at the wobble position (usually position 34) of an AUA-specific isoleucine tRNA, to form the derivative lysidine. This modification converts both the codon specificity of tRNA(Ile) from AUG to AUA and its amino acid specificity from methionine to isoleucine.
biological process
    GO:0006400    tRNA modification    The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
    GO:0002136    tRNA wobble base lysidine biosynthesis    The process in which the carbonyl of cytosine at position 34 of a tRNA is post-transcriptionally replaced by lysine.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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