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(-) Description

Title :  RV2002 GENE PRODUCT FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  J. K. Yang, M. S. Park, G. S. Waldo, S. W. Suh, Tb Structural Genomics Consortium (Tbsgc)
Date :  16 Dec 02  (Deposition) - 30 Dec 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Directed Evolution, Gfp, Sdr, Hydroxysteroid Dehydrogenase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. K. Yang, M. S. Park, G. S. Waldo, S. W. Suh
Directed Evolution Approach To A Structural Genomics Project: Rv2002 From Mycobacterium Tuberculosis
Proc. Natl. Acad. Sci. Usa V. 100 455 2003
PubMed-ID: 12524453  |  Reference-DOI: 10.1073/PNAS.0137017100
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE RV2002
    Chains: A, B, C, D
    EC Number: 1.1.1.53
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: RV2002 GENE PRODUCT

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric/Biological Unit (2, 24)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:14 , ARG A:17 , GLY A:18 , MSE A:19 , ASP A:38 , ILE A:39 , LEU A:40 , LEU A:60 , ASP A:61 , VAL A:62 , ASN A:88 , ALA A:89 , GLY A:90 , ILE A:91 , VAL A:111 , ILE A:138 , SER A:139 , SER A:140 , TYR A:153 , LYS A:157 , PRO A:183 , GLY A:184 , LEU A:185 , VAL A:186 , THR A:188 , PRO A:189 , MSE A:190 , THR A:191 , HOH A:611 , HOH A:779BINDING SITE FOR RESIDUE NAD A 300
2AC2SOFTWAREGLY B:14 , ARG B:17 , GLY B:18 , MSE B:19 , ASP B:38 , LEU B:40 , LEU B:60 , ASP B:61 , VAL B:62 , ASN B:88 , ALA B:89 , GLY B:90 , ILE B:91 , ILE B:138 , SER B:139 , SER B:140 , TYR B:153 , LYS B:157 , PRO B:183 , GLY B:184 , VAL B:186 , THR B:188 , PRO B:189 , MSE B:190 , THR B:191 , HOH B:519 , HOH B:588 , HOH B:684 , HOH B:750BINDING SITE FOR RESIDUE NAD B 1300
3AC3SOFTWAREGLY C:14 , ARG C:17 , GLY C:18 , MSE C:19 , ASP C:38 , LEU C:40 , LEU C:60 , ASP C:61 , VAL C:62 , ASN C:88 , ALA C:89 , GLY C:90 , ILE C:91 , ILE C:138 , SER C:139 , SER C:140 , TYR C:153 , LYS C:157 , PRO C:183 , GLY C:184 , LEU C:185 , VAL C:186 , THR C:188 , PRO C:189 , MSE C:190 , THR C:191 , HOH C:501 , HOH C:508 , HOH C:551 , HOH C:695 , HOH C:699 , HOH C:703BINDING SITE FOR RESIDUE NAD C 2300
4AC4SOFTWAREGLY D:14 , ARG D:17 , GLY D:18 , MSE D:19 , ASP D:38 , ILE D:39 , LEU D:40 , LEU D:60 , ASP D:61 , VAL D:62 , ASN D:88 , GLY D:90 , ILE D:91 , ILE D:138 , SER D:139 , SER D:140 , TYR D:153 , LYS D:157 , PRO D:183 , GLY D:184 , VAL D:186 , THR D:188 , PRO D:189 , MSE D:190 , THR D:191 , HOH D:527 , HOH D:635 , HOH D:667BINDING SITE FOR RESIDUE NAD D 3300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NFR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NFR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NFR)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.HSD_MYCTO140-168
 
 
 		  4A:140-168
B:140-168
C:140-168
D:140-168
HSD_MYCTU140-168
 
 
 		  4A:140-168
B:140-168
C:140-168
D:140-168

(-) Exons   (0, 0)

(no "Exon" information available for 1NFR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTO | P9WGT0 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTO     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfra_ A: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrA00 A:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhh...............hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr A   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain A from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTU | P9WGT1 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTU     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfra_ A: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrA00 A:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhh...............hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr A   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTO | P9WGT0 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTO     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrb_ B: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrB00 B:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr B   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTU | P9WGT1 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTU     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrb_ B: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrB00 B:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr B   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain C from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTO | P9WGT0 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTO     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrc_ C: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrC00 C:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr C   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain C from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTU | P9WGT1 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTU     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrc_ C: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrC00 C:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr C   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain D from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTO | P9WGT0 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTO     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrd_ D: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrD00 D:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
           Pfam domains (1) ------adh_short-1nfrD01 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------adh_short-1nfrD02 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------adh_short-1nfrD03 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------adh_short-1nfrD04 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:140-168    ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr D   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE                                                   


Chain D from PDB  Type:PROTEIN  Length:244
 aligned with HSD_MYCTU | P9WGT1 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:244
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    
            HSD_MYCTU     2 SGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
               SCOP domains d1nfrd_ D: Putative oxidoreductase Rv2002                                                                                                                                                                                                            SCOP domains
               CATH domains 1nfrD00 D:2-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
           Pfam domains (1) ------adh_short-1nfrD01 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------adh_short-1nfrD02 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------adh_short-1nfrD03 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------adh_short-1nfrD04 D:8-172                                                                                                                                            ------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:140-168    ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfr D   2 SGRLTGKVALVSGGARGmGASHVRAmVAEGAKVVFGDILDEEGKAmAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPmKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPmTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN 245
                                    11       |21     |  31        41     |  51        61        71        81        91       101       111       121     | 131       141       151       161       171       181       191       201       211       221       231       241    
                                            19-MSE  27-MSE              47-MSE                                                                         127-MSE                                                        190-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (7, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (HSD_MYCTO | P9WGT0)
molecular function
    GO:0047044    androstan-3-alpha,17-beta-diol dehydrogenase activity    Catalysis of the reaction: NAD+ + androstan-3-alpha,17-beta-diol = 17-beta-hydroxyandrostan-3-one + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008207    C21-steroid hormone metabolic process    The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Chain A,B,C,D   (HSD_MYCTU | P9WGT1)
molecular function
    GO:0047044    androstan-3-alpha,17-beta-diol dehydrogenase activity    Catalysis of the reaction: NAD+ + androstan-3-alpha,17-beta-diol = 17-beta-hydroxyandrostan-3-one + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008207    C21-steroid hormone metabolic process    The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
cellular component
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  1nfr
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  1.1.1.53
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSD_MYCTO | P9WGT0: 1nff 1nfq
        HSD_MYCTU | P9WGT1: 1nff 1nfq

(-) Related Entries Specified in the PDB File

1nff COMPLEXED WITH NAD+
1nfq COMPLEXED WITH NADH AND ANDROSTERONE RELATED ID: RV2002 RELATED DB: TARGETDB