Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - manually
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - manually
NMR Structure - manually  (Jmol Viewer)
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  SH3 DOMAIN FROM HUMAN NEBULIN, NMR, MINIMIZED AVERAGE STRUCTURE
 
Authors :  A. S. Politou, A. Pastore
Date :  07 Aug 97  (Deposition) - 24 Dec 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Sh3 Domain, Nebulin, Z-Disk Assembly, Actin-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. S. Politou, S. Millevoi, M. Gautel, B. Kolmerer, A. Pastore
Sh3 In Muscles: Solution Structure Of The Sh3 Domain From Nebulin.
J. Mol. Biol. V. 276 189 1998
PubMed-ID: 9514727  |  Reference-DOI: 10.1006/JMBI.1997.1521
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NEBULIN
    Cell LineBL21
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidBL21
    Expression System StrainBL21 (DE3)-[PLYSS]
    Expression System Taxid562
    Expression System VectorPET
    FragmentSH3 DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NEB)

(-) Sites  (0, 0)

(no "Site" information available for 1NEB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NEB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NEB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NEB)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH3PS50002 Src homology 3 (SH3) domain profile.NEBU_HUMAN6610-6669  1A:1-60

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000001728531bENSE00001399485chr2:152590989-15259091278NEBU_HUMAN-00--
1.2ENST000001728532ENSE00001431274chr2:152590309-15259022684NEBU_HUMAN-00--
1.3ENST000001728533ENSE00002179685chr2:152589699-15258963565NEBU_HUMAN1-12120--
1.4ENST000001728534ENSE00001722914chr2:152586170-15258612942NEBU_HUMAN13-26140--
1.5ENST000001728535ENSE00001645042chr2:152584420-152584205216NEBU_HUMAN27-98720--
1.6ENST000001728536ENSE00001743431chr2:152582074-152581967108NEBU_HUMAN99-134360--
1.7ENST000001728537ENSE00001605564chr2:152581475-152581371105NEBU_HUMAN135-169350--
1.8ENST000001728538ENSE00001636464chr2:152580878-152580774105NEBU_HUMAN170-204350--
1.9ENST000001728539ENSE00001673662chr2:152580000-152579896105NEBU_HUMAN205-239350--
1.10ENST0000017285310ENSE00001616802chr2:152574034-152573930105NEBU_HUMAN240-274350--
1.11ENST0000017285311ENSE00001627276chr2:152567052-152566948105NEBU_HUMAN275-309350--
1.12ENST0000017285312ENSE00001601326chr2:152566277-152566170108NEBU_HUMAN310-345360--
1.13aENST0000017285313aENSE00001761165chr2:152563511-152563395117NEBU_HUMAN346-384390--
1.14ENST0000017285314ENSE00001723570chr2:152554162-152554058105NEBU_HUMAN385-419350--
1.15ENST0000017285315ENSE00001623094chr2:152553971-152553864108NEBU_HUMAN420-455360--
1.16ENST0000017285316ENSE00001712335chr2:152553766-152553662105NEBU_HUMAN456-490350--
1.17ENST0000017285317ENSE00001667806chr2:152553249-15255315199NEBU_HUMAN491-523330--
1.18ENST0000017285318ENSE00001739156chr2:152552196-152552092105NEBU_HUMAN524-558350--
1.19ENST0000017285319ENSE00001610163chr2:152551143-152551036108NEBU_HUMAN559-594360--
1.20ENST0000017285320ENSE00001667130chr2:152550950-152550837114NEBU_HUMAN595-632380--
1.21ENST0000017285321ENSE00001698535chr2:152548876-152548775102NEBU_HUMAN633-666340--
1.22ENST0000017285322ENSE00001634559chr2:152548680-152548573108NEBU_HUMAN667-702360--
1.23ENST0000017285323ENSE00001761529chr2:152548482-152548378105NEBU_HUMAN703-737350--
1.24aENST0000017285324aENSE00001623126chr2:152547339-15254724199NEBU_HUMAN738-770330--
1.25ENST0000017285325ENSE00001745166chr2:152544910-152544806105NEBU_HUMAN771-805350--
1.26ENST0000017285326ENSE00001747713chr2:152544247-152544140108NEBU_HUMAN806-841360--
1.27ENST0000017285327ENSE00001793952chr2:152544046-152543933114NEBU_HUMAN842-879380--
1.28ENST0000017285328ENSE00001691257chr2:152541489-152541292198NEBU_HUMAN880-945660--
1.29ENST0000017285329ENSE00001762751chr2:152539283-152539176108NEBU_HUMAN946-981360--
1.30ENST0000017285330ENSE00001710785chr2:152537342-15253724499NEBU_HUMAN982-1014330--
1.31ENST0000017285331ENSE00001701132chr2:152536536-152536432105NEBU_HUMAN1015-1049350--
1.32ENST0000017285332ENSE00001723741chr2:152536342-152536235108NEBU_HUMAN1050-1085360--
1.33ENST0000017285333ENSE00001593182chr2:152534701-152534390312NEBU_HUMAN1086-11891040--
1.34ENST0000017285334ENSE00001711350chr2:152534285-152534079207NEBU_HUMAN1190-1258690--
1.35ENST0000017285335ENSE00001742010chr2:152531905-152531801105NEBU_HUMAN1259-1293350--
1.36ENST0000017285336ENSE00001792612chr2:152531098-152530991108NEBU_HUMAN1294-1329360--
1.37ENST0000017285337ENSE00001764486chr2:152529194-152528883312NEBU_HUMAN1330-14331040--
1.38bENST0000017285338bENSE00001784981chr2:152527743-152527537207NEBU_HUMAN1434-1502690--
1.39ENST0000017285339ENSE00001781082chr2:152525645-152525541105NEBU_HUMAN1503-1537350--
1.40bENST0000017285340bENSE00001756130chr2:152524425-152524318108NEBU_HUMAN1538-1573360--
1.41ENST0000017285341ENSE00001653607chr2:152522915-152522604312NEBU_HUMAN1574-16771040--
1.42ENST0000017285342ENSE00001724181chr2:152522053-152521847207NEBU_HUMAN1678-1746690--
1.43ENST0000017285343ENSE00001781826chr2:152521377-152521273105NEBU_HUMAN1747-1781350--
1.44ENST0000017285344ENSE00001639648chr2:152521122-152521015108NEBU_HUMAN1782-1817360--
1.45ENST0000017285345ENSE00001770129chr2:152520373-152520062312NEBU_HUMAN1818-19211040--
1.46ENST0000017285346ENSE00001655944chr2:152518855-152518649207NEBU_HUMAN1922-1990690--
1.47ENST0000017285347ENSE00001695914chr2:152515683-152515579105NEBU_HUMAN1991-2025350--
1.48ENST0000017285348ENSE00001646512chr2:152514604-152514497108NEBU_HUMAN2026-2061360--
1.49ENST0000017285349ENSE00001597824chr2:152512978-152512667312NEBU_HUMAN2062-21651040--
1.50ENST0000017285350ENSE00001622980chr2:152512537-152512331207NEBU_HUMAN2166-2234690--
1.51ENST0000017285351ENSE00001693101chr2:152511888-152511784105NEBU_HUMAN2235-2269350--
1.52ENST0000017285352ENSE00001709812chr2:152510613-152510506108NEBU_HUMAN2270-2305360--
1.53ENST0000017285353ENSE00001605838chr2:152507399-152507088312NEBU_HUMAN2306-24091040--
1.54ENST0000017285354ENSE00001727095chr2:152506893-152506690204NEBU_HUMAN2410-2477680--
1.55ENST0000017285355ENSE00001689357chr2:152502748-152502644105NEBU_HUMAN2478-2512350--
1.56ENST0000017285356ENSE00001632638chr2:152501089-152500982108NEBU_HUMAN2513-2548360--
1.57ENST0000017285357ENSE00001641403chr2:152500643-152500332312NEBU_HUMAN2549-26521040--
1.58ENST0000017285358ENSE00001674093chr2:152499867-152499664204NEBU_HUMAN2653-2720680--
1.59ENST0000017285359ENSE00001643415chr2:152499383-152499279105NEBU_HUMAN2721-2755350--
1.60ENST0000017285360ENSE00001761235chr2:152499195-152499088108NEBU_HUMAN2756-2791360--
1.61ENST0000017285361ENSE00001654970chr2:152497180-152496869312NEBU_HUMAN2792-28951040--
1.62bENST0000017285362bENSE00001630028chr2:152496574-152496371204NEBU_HUMAN2896-2963680--
1.66ENST0000017285366ENSE00001602096chr2:152487333-152487229105NEBU_HUMAN2964-2998350--
1.67ENST0000017285367ENSE00001783082chr2:152486160-152486053108NEBU_HUMAN2999-3034360--
1.68ENST0000017285368ENSE00001739001chr2:152484348-152484037312NEBU_HUMAN3035-31381040--
1.69ENST0000017285369ENSE00001795622chr2:152483719-152483516204NEBU_HUMAN3139-3206680--
1.70ENST0000017285370ENSE00001701038chr2:152482152-152482048105NEBU_HUMAN3207-3241350--
1.71ENST0000017285371ENSE00001682642chr2:152477540-152477433108NEBU_HUMAN3242-3277360--
1.72ENST0000017285372ENSE00001625978chr2:152476276-152475965312NEBU_HUMAN3278-33811040--
1.73ENST0000017285373ENSE00001732142chr2:152474992-152474789204NEBU_HUMAN3382-3449680--
1.74bENST0000017285374bENSE00001769556chr2:152473982-152473878105NEBU_HUMAN3450-3484350--
1.75aENST0000017285375aENSE00001711047chr2:152472623-152472516108NEBU_HUMAN3485-3520360--
1.76ENST0000017285376ENSE00001762413chr2:152471101-152470790312NEBU_HUMAN3521-36241040--
1.77ENST0000017285377ENSE00001605859chr2:152468903-152468700204NEBU_HUMAN3625-3692680--
1.78ENST0000017285378ENSE00001784415chr2:152467380-152467276105NEBU_HUMAN3693-3727350--
1.79ENST0000017285379ENSE00001800875chr2:152467137-152467030108NEBU_HUMAN3728-3763360--
1.80ENST0000017285380ENSE00001734745chr2:152466634-152466323312NEBU_HUMAN3764-38671040--
1.95ENST0000017285395ENSE00001659827chr2:152432868-152432665204NEBU_HUMAN3868-3935680--
1.96ENST0000017285396ENSE00001803435chr2:152432313-152432209105NEBU_HUMAN3936-3970350--
1.97ENST0000017285397ENSE00001414520chr2:152427115-152427011105NEBU_HUMAN3971-4005350--
1.98ENST0000017285398ENSE00001413260chr2:152426906-152426595312NEBU_HUMAN4006-41091040--
1.99ENST0000017285399ENSE00001413492chr2:152425886-152425782105NEBU_HUMAN4110-4144350--
1.100ENST00000172853100ENSE00001429936chr2:152425230-15242513299NEBU_HUMAN4145-4177330--
1.101ENST00000172853101ENSE00001431119chr2:152424931-152424830102NEBU_HUMAN4178-4211340--
1.102ENST00000172853102ENSE00001427528chr2:152424692-152424585108NEBU_HUMAN4212-4247360--
1.103ENST00000172853103ENSE00001426941chr2:152423993-152423682312NEBU_HUMAN4248-43511040--
1.104ENST00000172853104ENSE00001423503chr2:152422334-152422230105NEBU_HUMAN4352-4386350--
1.105ENST00000172853105ENSE00001421665chr2:152422119-152422015105NEBU_HUMAN4387-4421350--
1.106ENST00000172853106ENSE00001402823chr2:152421662-152421558105NEBU_HUMAN4422-4456350--
1.107ENST00000172853107ENSE00001403427chr2:152420444-152420337108NEBU_HUMAN4457-4492360--
1.108ENST00000172853108ENSE00001404007chr2:152420233-152420120114NEBU_HUMAN4493-4530380--
1.109ENST00000172853109ENSE00001404589chr2:152419322-152419125198NEBU_HUMAN4531-4596660--
1.110ENST00000172853110ENSE00001401097chr2:152418728-152418624105NEBU_HUMAN4597-4631350--
1.111ENST00000172853111ENSE00001433688chr2:152417826-152417722105NEBU_HUMAN4632-4666350--
1.112ENST00000172853112ENSE00001399902chr2:152417622-152417518105NEBU_HUMAN4667-4701350--
1.113ENST00000172853113ENSE00002146734chr2:152417213-152417106108NEBU_HUMAN4702-4737360--
1.114ENST00000172853114ENSE00001676624chr2:152411558-152411445114NEBU_HUMAN4738-4775380--
1.115ENST00000172853115ENSE00001756367chr2:152410539-152410342198NEBU_HUMAN4776-4841660--
1.116ENST00000172853116ENSE00001727473chr2:152410016-152409912105NEBU_HUMAN4842-4876350--
1.117ENST00000172853117ENSE00001662638chr2:152409290-152409186105NEBU_HUMAN4877-4911350--
1.118ENST00000172853118ENSE00001754822chr2:152408359-152408252108NEBU_HUMAN4912-4947360--
1.119ENST00000172853119ENSE00001613331chr2:152406254-152406150105NEBU_HUMAN4948-4982350--
1.120ENST00000172853120ENSE00001695544chr2:152404929-152404822108NEBU_HUMAN4983-5018360--
1.121ENST00000172853121ENSE00001620884chr2:152404252-152404148105NEBU_HUMAN5019-5053350--
1.122ENST00000172853122ENSE00001658406chr2:152404047-152403943105NEBU_HUMAN5054-5088350--
1.123ENST00000172853123ENSE00001710069chr2:152402957-15240285999NEBU_HUMAN5089-5121330--
1.124ENST00000172853124ENSE00001779064chr2:152402512-152402402111NEBU_HUMAN5122-5158370--
1.125ENST00000172853125ENSE00001629322chr2:152398065-152397961105NEBU_HUMAN5159-5193350--
1.126aENST00000172853126aENSE00001764641chr2:152397315-152397211105NEBU_HUMAN5194-5228350--
1.127ENST00000172853127ENSE00001755944chr2:152396962-152396858105NEBU_HUMAN5229-5263350--
1.128ENST00000172853128ENSE00001778582chr2:152394758-152394654105NEBU_HUMAN5264-5298350--
1.129ENST00000172853129ENSE00001651075chr2:152394490-152394386105NEBU_HUMAN5299-5333350--
1.130ENST00000172853130ENSE00001739237chr2:152393750-152393646105NEBU_HUMAN5334-5368350--
1.131ENST00000172853131ENSE00001666728chr2:152392309-152392205105NEBU_HUMAN5369-5403350--
1.132ENST00000172853132ENSE00001795260chr2:152390833-152390729105NEBU_HUMAN5404-5438350--
1.135dENST00000172853135dENSE00001800943chr2:152388410-152388306105NEBU_HUMAN5439-5473350--
1.136aENST00000172853136aENSE00001767374chr2:152387615-152387508108NEBU_HUMAN5474-5509360--
1.137ENST00000172853137ENSE00001593274chr2:152385828-152385724105NEBU_HUMAN5510-5544350--
1.138ENST00000172853138ENSE00001649708chr2:152384099-152383995105NEBU_HUMAN5545-5579350--
1.139ENST00000172853139ENSE00001615203chr2:152383536-152383432105NEBU_HUMAN5580-5614350--
1.140ENST00000172853140ENSE00001618217chr2:152382776-152382672105NEBU_HUMAN5615-5649350--
1.141aENST00000172853141aENSE00001630299chr2:152382582-152382472111NEBU_HUMAN5650-5686370--
1.142ENST00000172853142ENSE00001745106chr2:152381787-152381677111NEBU_HUMAN5687-5723370--
1.143ENST00000172853143ENSE00001714938chr2:152381130-152381029102NEBU_HUMAN5724-5757340--
1.144ENST00000172853144ENSE00001636699chr2:152380929-152380825105NEBU_HUMAN5758-5792350--
1.145bENST00000172853145bENSE00001693713chr2:152376282-152376172111NEBU_HUMAN5793-5829370--
1.146ENST00000172853146ENSE00001766990chr2:152375583-152375479105NEBU_HUMAN5830-5864350--
1.147ENST00000172853147ENSE00001654407chr2:152374936-152374832105NEBU_HUMAN5865-5899350--
1.148ENST00000172853148ENSE00001688216chr2:152373077-152372973105NEBU_HUMAN5900-5934350--
1.149ENST00000172853149ENSE00001616427chr2:152371442-152371332111NEBU_HUMAN5935-5971370--
1.150ENST00000172853150ENSE00001687639chr2:152370942-152370832111NEBU_HUMAN5972-6008370--
1.151aENST00000172853151aENSE00001783273chr2:152370207-152370094114NEBU_HUMAN6009-6046380--
1.152ENST00000172853152ENSE00001638504chr2:152369351-152369247105NEBU_HUMAN6047-6081350--
1.153aENST00000172853153aENSE00001594538chr2:152364623-152364519105NEBU_HUMAN6082-6116350--
1.154aENST00000172853154aENSE00001758298chr2:152363527-152363423105NEBU_HUMAN6117-6151350--
1.155ENST00000172853155ENSE00001622603chr2:152362772-15236268093NEBU_HUMAN6152-6182310--
1.156ENST00000172853156ENSE00001614611chr2:152362084-15236199293NEBU_HUMAN6183-6213310--
1.157aENST00000172853157aENSE00001657467chr2:152359955-15235986393NEBU_HUMAN6214-6244310--
1.158ENST00000172853158ENSE00001799958chr2:152359399-15235930793NEBU_HUMAN6245-6275310--
1.163bENST00000172853163bENSE00001608853chr2:152352882-15235279093NEBU_HUMAN6276-6306310--
1.164ENST00000172853164ENSE00001774468chr2:152350767-15235067593NEBU_HUMAN6307-6337310--
1.165ENST00000172853165ENSE00001685616chr2:152350381-15235028993NEBU_HUMAN6338-6368310--
1.166ENST00000172853166ENSE00002140464chr2:152349959-15234986793NEBU_HUMAN6369-6399310--
1.167bENST00000172853167bENSE00001766831chr2:152349008-152348901108NEBU_HUMAN6400-6435360--
1.168bENST00000172853168bENSE00001615107chr2:152348795-152348612184NEBU_HUMAN6436-6497620--
1.168dENST00000172853168dENSE00001603214chr2:152348289-15234819793NEBU_HUMAN6497-6528320--
1.169ENST00000172853169ENSE00001753631chr2:152347032-152346886147NEBU_HUMAN6528-6577500--
1.170ENST00000172853170ENSE00001750691chr2:152346591-152346485107NEBU_HUMAN6577-6612361A:1-33
1.171bENST00000172853171bENSE00001620401chr2:152342447-152341855593NEBU_HUMAN6613-6669571A:4-6057

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:60
 aligned with NEBU_HUMAN | P20929 from UniProtKB/Swiss-Prot  Length:6669

    Alignment length:60
                                  6619      6629      6639      6649      6659      6669
          NEBU_HUMAN   6610 TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 6669
               SCOP domains d1neba_ A: SH3 domain from nebulin                           SCOP domains
               CATH domains 1nebA00 A:1-60 SH3 Domains                                   CATH domains
               Pfam domains ------SH3_1-1nebA01 A:7-54                            ------ Pfam domains
         Sec.struct. author .....eeee.eeee......eeee..eee..eee...eeeeee....eeeeeehhheeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE SH3  PDB: A:1-60 UniProt: 6610-6669                          PROSITE
               Transcript 1 1.1Exon 1.171b  PDB: A:4-60 UniProt: 6613-6669               Transcript 1
                1neb A    1 TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60
                                    10        20        30        40        50        60

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: SH3 (175)

(-) Gene Ontology  (14, 14)

NMR Structure(hide GO term definitions)
Chain A   (NEBU_HUMAN | P20929)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
biological process
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:0007517    muscle organ development    The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
    GO:0030832    regulation of actin filament length    Any process that controls the length of actin filaments in a cell.
    GO:0007525    somatic muscle development    The process whose specific outcome is the progression of the somatic muscle over time, from its formation to the mature structure. Somatic muscles are striated muscle structures that connect to the exoskeleton or cuticle.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0030017    sarcomere    The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1neb)
 
  Sites
(no "Sites" information available for 1neb)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1neb)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1neb
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  NEBU_HUMAN | P20929
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  NEBU_HUMAN | P20929
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NEBU_HUMAN | P209291ark

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1NEB)