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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOPLASMA ACIDOPHILUM 1320 (APC5513)
 
Authors :  Y. Kim, A. Joachimiak, A. Edwards, X. Xu, D. Christendat, Midwest Center For Structural Genomics (Mcsg)
Date :  10 Dec 02  (Deposition) - 01 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Conserved Hypothetical Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, A. Joachimiak, A. Edwards, X. Xu, D. Christendat
Crystal Structure Of Thermoplasma Acidophilum 1320 (Apc5513)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TA1320
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TA1320
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 2303

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:28 , TYR A:175BINDING SITE FOR RESIDUE FMT A 301

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:64 -A:91
2B:64 -B:91

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NE2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NE2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NE2)

(-) Exons   (0, 0)

(no "Exon" information available for 1NE2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
 aligned with Q9HIL9_THEAC | Q9HIL9 from UniProtKB/TrEMBL  Length:197

    Alignment length:197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       
         Q9HIL9_THEAC     1 MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNHSF 197
               SCOP domains d1ne2a_ A: Hypothe        tical protein Ta1320                                                                                                                                                        SCOP domains
               CATH domains -1ne2A00 A:2-197 V        accinia Virus protein VP39                                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....--------...hhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh...eeeeee.hhhhhhhhhhhh...eeee.hhhhh...eeeeee....-------hhhhhhhhhhheeeeeeeee..hhhhhhhhhhhheeeeeeeeeeee.....------..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ne2 A   1 mGIKNDLEIRLQKLQQQG--------YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFmVADVSEISGKYDTWImNPPF-------DRAFIDKAFETSmWIYSIGNAKARDFLRREFSARGDVFREEKVYITVPRIY------RARIEAVIFGVRNHSF 197
                            |       10       | -      | 30        40        50        60        70        80        90      |100       110  |   |  -    |  130      |140       150       160       170    |    - |     190       
                            |               18       27                                                                    97-MSE         113-MSE     125         137-MSE                               175    182               
                            1-MSE                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:184
 aligned with Q9HIL9_THEAC | Q9HIL9 from UniProtKB/TrEMBL  Length:197

    Alignment length:197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       
         Q9HIL9_THEAC     1 MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNHSF 197
               SCOP domains d1ne2b_ B: Hypo             thetical protein Ta1320                                                                                                                                                   SCOP domains
               CATH domains -1ne2B00 B:2-19             7 Vaccinia Virus protein VP39                                                                                                                                             CATH domains
           Pfam domains (1) -------------------------------PrmA-1ne2B01 B:32-110                                                          --------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------PrmA-1ne2B02 B:32-110                                                          --------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhh...-------------.hhhhhhhhhhhhhhh......eeeee....hhhhhhhhhh...eeeeee.hhhhhhhhhhhh...eeee.hhhhh...eeeeee........hhhhhhhhhhhhhheeeeeeeee..hhhhhhhhhhhheeeeeeeeeeee.hhhhh.......eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ne2 B   1 mGIKNDLEIRLQKLQ-------------TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFmVADVSEISGKYDTWImNPPFGSVVKHSDRAFIDKAFETSmWIYSIGNAKARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNHSF 197
                            |       10    |    -        30        40        50        60        70        80        90      |100       110  |    120       130      |140       150       160       170       180       190       
                            1-MSE        15            29                                                                  97-MSE         113-MSE                 137-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1NE2)

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