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(-) Description

Title :  CRYSTAL STRUCTURE OF CARNITINE ACETYLTRANSFERASE
 
Authors :  G. Jogl, L. Tong
Date :  09 Dec 02  (Deposition) - 28 Jan 03  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Acetyl Transfer, Coa, Coenzyme A, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Jogl, L. Tong
Crystal Structure Of Carnitine Acetyltransferase And Implications For The Catalytic Mechanism And Fatty Acid Transport
Cell(Cambridge, Mass. ) V. 112 113 2003
PubMed-ID: 12526798  |  Reference-DOI: 10.1016/S0092-8674(02)01228-X

(-) Compounds

Molecule 1 - CARNITINE ACETYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: DL41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CARNITINE ACETYLASE;
CAT;
CARNITINE O-ACETYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 40)

Asymmetric Unit (1, 40)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1NDB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NDB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NDB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NDB)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYLTRANSF_C_1PS00439 Acyltransferases ChoActase / COT / CPT family signature 1.CACP_MOUSE35-50
 		  2A:35-50
B:35-50
2ACYLTRANSF_C_2PS00440 Acyltransferases ChoActase / COT / CPT family signature 2.CACP_MOUSE321-348
 		  2A:321-348
B:321-348
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYLTRANSF_C_1PS00439 Acyltransferases ChoActase / COT / CPT family signature 1.CACP_MOUSE35-50
 		  1A:35-50
-
2ACYLTRANSF_C_2PS00440 Acyltransferases ChoActase / COT / CPT family signature 2.CACP_MOUSE321-348
 		  1A:321-348
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYLTRANSF_C_1PS00439 Acyltransferases ChoActase / COT / CPT family signature 1.CACP_MOUSE35-50
 		  1-
B:35-50
2ACYLTRANSF_C_2PS00440 Acyltransferases ChoActase / COT / CPT family signature 2.CACP_MOUSE321-348
 		  1-
B:321-348

(-) Exons   (0, 0)

(no "Exon" information available for 1NDB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:596
 aligned with CACP_MOUSE | P47934 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:596
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619      
           CACP_MOUSE    30 AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK 625
               SCOP domains d1ndba1 A:30-405 Carnitine acetyltransferase                                                                                                                                                                                                                                                                                                                                            d1ndba2 A:406-625 Carnitine acetyltransferase                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee......hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...eeee......eeee.........eeeeee..eeeeee.........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhh................eeeee.....eeeee.....hhhhhhhhhhhhhhhh................ee.....hhhhhhhhhhhhhhhhhhhhheeeeeeee....hhhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeee........eeeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhh...eeeee.......eee........eeeeeee....eeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----ACYLTRANSF_C_1  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYLTRANSF_C_2              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ndb A  30 AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKmENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSmIDNETLPVEFLGGQPLCmNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQmLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGmVYEHAAAEGPPIVALVDHVmEYTKKPELVRSPmVPLPmPKKLRFNITPEIKNDIEKAKQNLSImIQDLDImmLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRmFHLGRTDTIRSASIDSLAFVKGmGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSmPDIFmDTSYAIAmHFNLSTSQVPAKTDCVmFFGPVVPDGYGICYNPmEAHINFSVSAYNSCAETNAARmAHYLEKALLDmRTLLQNHPRAK 625
                                    39        49        59        69        79        89    |   99       109       119       129       139       149  |    159       169|      179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369  |    379       389       399   |   409||     419       429       439       449       459       469       479  |    489       499       509       519       529    |  539       549       559    |  569       579 |     589       599   |   609    |  619      
                                                                                           94-MSE                                                   152-MSE           170-MSE                                                                                                                                   308-MSE                        339-MSE             359-MSE      372-MSE|                       403-MSE  ||                                             459-MSE                482-MSE                                             534-MSE|     547-MSE          564-MSE          581-MSE               603-MSE    614-MSE       
                                                                                                                                                                                                                                                                                                                                                                                     377-MSE                          410-MSE                                                                                                                          539-MSE                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                       411-MSE                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:596
 aligned with CACP_MOUSE | P47934 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:596
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619      
           CACP_MOUSE    30 AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK 625
               SCOP domains d1ndbb1 B:30-405 Carnitine acetyltransferase                                                                                                                                                                                                                                                                                                                                            d1ndbb2 B:406-625 Carnitine acetyltransferase                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Carn_acyltransf-1ndbB01 B:34-616                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       --------- Pfam domains (1)
           Pfam domains (2) ----Carn_acyltransf-1ndbB02 B:34-616                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       --------- Pfam domains (2)
         Sec.struct. author hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhh.............eeee......hhhhhhhhhhhhhhhhhhhhhhhhh......ee..ee..hhhhhh...eeee......eeee.........eeeeee..eeeeee.........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh................eeeee.....eeeee.....hhhhhhhhhhhhhhhhh...............eee....hhhhhhhhhhhhhhhhhhhhheeeeeeee....hhhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeee........eeee...hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhh...eeeee.......eee........eeeeeee....eeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----ACYLTRANSF_C_1  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYLTRANSF_C_2              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ndb B  30 AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKmENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSmIDNETLPVEFLGGQPLCmNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQmLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGmVYEHAAAEGPPIVALVDHVmEYTKKPELVRSPmVPLPmPKKLRFNITPEIKNDIEKAKQNLSImIQDLDImmLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRmFHLGRTDTIRSASIDSLAFVKGmGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSmPDIFmDTSYAIAmHFNLSTSQVPAKTDCVmFFGPVVPDGYGICYNPmEAHINFSVSAYNSCAETNAARmAHYLEKALLDmRTLLQNHPRAK 625
                                    39        49        59        69        79        89    |   99       109       119       129       139       149  |    159       169|      179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369  |    379       389       399   |   409||     419       429       439       449       459       469       479  |    489       499       509       519       529    |  539       549       559    |  569       579 |     589       599   |   609    |  619      
                                                                                           94-MSE                                                   152-MSE           170-MSE                                                                                                                                   308-MSE                        339-MSE             359-MSE      372-MSE|                       403-MSE  ||                                             459-MSE                482-MSE                                             534-MSE|     547-MSE          564-MSE          581-MSE               603-MSE    614-MSE       
                                                                                                                                                                                                                                                                                                                                                                                     377-MSE                          410-MSE                                                                                                                          539-MSE                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                       411-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1NDB)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: CoA-acyltrans (22)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (CACP_MOUSE | P47934)
molecular function
    GO:0004092    carnitine O-acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + carnitine = (R)-O-acetylcarnitine + CoA.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0019254    carnitine metabolic process, CoA-linked    The chemical reactions and pathways involving carnitine, where metabolism is linked to CoA.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CACP_MOUSE | P47934: 1ndf 1ndi 1t7n 1t7o 1t7q 2h3p 2h3u 2h3w

(-) Related Entries Specified in the PDB File

1ndf CARNITINE ACETYLTRANSFERASE COMPLEXED WITH CARNITINE
1ndi CARNITINE ACETYLTRANSFERASE COMPLEXED WITH COENZYME A