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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS, REFINEMENT AND ENZYMATIC REACTION MECHANISM OF N-CARBAMOYLSARCOSINE AMIDOHYDROLASE FROM ARTHROBACTER SP. AT 2.0 ANGSTROMS RESOLUTION
 
Authors :  M. J. Romao, D. Turk, F. -Z. Gomis-Ruth, R. Huber, G. Schumacher, H. Mollering, L. Russmann
Date :  18 May 92  (Deposition) - 22 Jun 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Hydrolase(In Linear Amides) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Romao, D. Turk, F. X. Gomis-Ruth, R. Huber, G. Schumacher, H. Mollering, L. Russmann
Crystal Structure Analysis, Refinement And Enzymatic Reaction Mechanism Of N-Carbamoylsarcosine Amidohydrolase From Arthrobacter Sp. At 2. 0 A Resolution.
J. Mol. Biol. V. 226 1111 1992
PubMed-ID: 1381445  |  Reference-DOI: 10.1016/0022-2836(92)91056-U
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - N-CARBAMOYLSARCOSINE AMIDOHYDROLASE
    Chains: A, B, C, D
    EC Number: 3.5.1.59
    Engineered: YES
    Organism Scientific: ARTHROBACTER SP.
    Organism Taxid: 1667

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:56 , PHE A:63 , THR A:173 , CYS A:177 , ARG A:202 , HOH A:403 , HOH A:415 , LYS B:217BINDING SITE FOR RESIDUE SO4 A 400
2AC2SOFTWARELYS A:217 , TRP B:56 , PHE B:63 , THR B:173 , GLY B:176 , CYS B:177 , ARG B:202 , HOH B:411 , HOH B:427BINDING SITE FOR RESIDUE SO4 B 400
3AC3SOFTWARETRP C:56 , PHE C:63 , THR C:173 , CYS C:177 , ARG C:202 , HOH C:405 , HOH C:419 , LYS D:217BINDING SITE FOR RESIDUE SO4 C 400
4AC4SOFTWARELYS C:217 , TRP D:56 , PHE D:63 , THR D:173 , CYS D:177 , ARG D:202 , HOH D:413 , HOH D:430BINDING SITE FOR RESIDUE SO4 D 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NBA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ala A:172 -Thr A:173
2Ala B:172 -Thr B:173
3Ala C:172 -Thr C:173
4Ala D:172 -Thr D:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NBA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NBA)

(-) Exons   (0, 0)

(no "Exon" information available for 1NBA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with CSH_ARTSP | P32400 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:253
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
            CSH_ARTSP     7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
               SCOP domains d1nbaa_ A: N-carbamoylsarcosine amidohydrolase                                                                                                                                                                                                                SCOP domains
               CATH domains 1nbaA00 A:7-259  [code=3.40.50.850, no name defined]                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...eeeeee.............hhhhhhh.hhhhh...hhhhh.hhhhh.....eeeee.........hhhhhhhhh...eeeeeee...hhhhhhhhhhhhhh.eeeee...ee....hhhhhhhhhhhhhh.eeehhhhhhhhhhhh.hhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nba A   7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with CSH_ARTSP | P32400 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:252
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257  
            CSH_ARTSP     8 FNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
               SCOP domains d1nbab_ B: N-carbamoylsarcosine amidohydrolase                                                                                                                                                                                                               SCOP domains
               CATH domains 1nbaB00 B:8-259  [code=3.40.50.850, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...eeeeee...............hhhhh.hhhhh...hhhhh.hhhhh.....eeeee.........hhhhhhhhh...eeeeeee...hhhhhhhhhhhhhh.eeeee...ee....hhhhhhhhhhhhhh.eeehhhhhhhhhhh..hhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1nba B   8 FNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257  


Chain C from PDB  Type:PROTEIN  Length:253
 aligned with CSH_ARTSP | P32400 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:253
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
            CSH_ARTSP     7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
               SCOP domains d1nbac_ C: N-carbamoylsarcosine amidohydrolase                                                                                                                                                                                                                SCOP domains
               CATH domains 1nbaC00 C:7-259  [code=3.40.50.850, no name defined]                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...eeeeee.............hhhhhhh.hhhhh...hhhhh.hhhhh.....eeeee.........hhhhhhhhh...eeeeeee...hhhhhhhhhhhhhh.eeeee...ee....hhhhhhhhhhhhhh.eeehhhhhhhhhhhh.hhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nba C   7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   


Chain D from PDB  Type:PROTEIN  Length:253
 aligned with CSH_ARTSP | P32400 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:253
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
            CSH_ARTSP     7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
               SCOP domains d1nbad_ D: N-carbamoylsarcosine amidohydrolase                                                                                                                                                                                                                SCOP domains
               CATH domains 1nbaD00 D:7-259  [code=3.40.50.850, no name defined]                                                                                                                                                                                                          CATH domains
           Pfam domains (1) --------------------------------------Isochorismatase-1nbaD01 D:45-226                                                                                                                                                      --------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------Isochorismatase-1nbaD02 D:45-226                                                                                                                                                      --------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------Isochorismatase-1nbaD03 D:45-226                                                                                                                                                      --------------------------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------Isochorismatase-1nbaD04 D:45-226                                                                                                                                                      --------------------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee..hhhhhh........hhhhhhhhhhhhhhhhhh....eeeeee.............hhhhhhh.hhhhh...hhhhh.hhhhh.....eeeee.........hhhhhhhhh...eeeeeee...hhhhhhhhhhhhhh.eeeee...ee....hhhhhhhhhhhhhh.eeehhhhhhhhhhhh.hhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nba D   7 TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV 259
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Isochorismatase] (9)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (CSH_ARTSP | P32400)
molecular function
    GO:0050127    N-carbamoylsarcosine amidase activity    Catalysis of the reaction: N-carbamoylsarcosine + H(2)O + 2 H(+) = CO(2) + NH(4)(+) + sarcosine.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0006602    creatinine catabolic process    The chemical reactions and pathways resulting in the breakdown of creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  1nba
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 Related Entries

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