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(-) Description

Title :  GPP-FOLDON:X-RAY STRUCTURE
 
Authors :  J. Stetefeld
Date :  29 Nov 02  (Deposition) - 25 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Keywords :  Collagen Assembly, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Stetefeld, S. Frank, M. Jenny, T. Schulthess, R. A. Kammerer, S. Boudko, R. Landwehr, K. Okuyama, J. Engel
Collagen Stabilization At Atomic Level. Crystal Structure Of Designed (Glypropro)(10)Foldon
Structure V. 11 339 2003
PubMed-ID: 12623021  |  Reference-DOI: 10.1016/S0969-2126(03)00025-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE (GLY-PRO-PRO) IS NATURALLY FOUND IN E.COLI
    Synonym: CCP4
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:56
                                                                                        
               SCOP domains d1naya_ A: Collagen-like peptides                        SCOP domains
               CATH domains 1nayA00 A:106-161                                        CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................eeeee..eeee.hhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 1nay A 106 GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDGEWVLLSTFL 161
                                   115       125       135       145       155      


Chain B from PDB  Type:PROTEIN  Length:55
                                                                                       
               SCOP domains d1nayb_ B: Collagen-like peptides                       SCOP domains
               CATH domains 1nayB00 B:207-261                                       CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author .......................................eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 1nay B 207 PPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDGEWVLLSTFL 261
                                   216       226       236       246       256     


Chain C from PDB  Type:PROTEIN  Length:56
                                                                                        
               SCOP domains d1nayc_ C: Collagen-like peptides                        SCOP domains
               CATH domains 1nayC00 C:306-361                                        CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 1nay C 306 GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDGEWVLLSTFL 361
                                   315       325       335       345       355
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

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