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(-) Description

Title :  CRYSTAL STRUCTURE OF NARBONIN REFINED AT 1.8 ANGSTROMS RESOLUTION
 
Authors :  M. Hennig, B. Schlesier, K. S. Wilson
Date :  10 Sep 93  (Deposition) - 31 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Plant Seed Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Hennig, S. Pfeffer-Hennig, Z. Dauter, K. S. Wilson, B. Schlesier, V. H. Nong
Crystal Structure Of Narbonin At 1. 8 A Resolution.
Acta Crystallogr. , Sect. D V. 51 177 1995
PubMed-ID: 15299319  |  Reference-DOI: 10.1107/S0907444994009807
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NARBONIN
    Chains: A
    Engineered: YES
    Organism Scientific: VICIA NARBONENSIS
    Organism Taxid: 3912

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NAR)

(-) Sites  (0, 0)

(no "Site" information available for 1NAR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NAR)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:38 -Phe A:39
2Glu A:138 -Pro A:139
3Trp A:261 -Asn A:262

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NAR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NAR)

(-) Exons   (0, 0)

(no "Exon" information available for 1NAR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
 aligned with Q08884_VICNA | Q08884 from UniProtKB/TrEMBL  Length:291

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
         Q08884_VICNA     2 PKPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIRSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHNKITRDIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAK 290
               SCOP domains d1nara_ A: Seed storage protein                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1narA00 A:1-289 Glycosidases                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------Glyco_hydro_18-1narA01 A:8-204                                                                                                                                                                       ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......................eeeeeeeeeeeee.....eeeeeee........hhhhhhhhhh....eeeeeeee..............hhhhhhhhhhhhhhh.ee..ee...eeeeee........hhhhhhhhhhhhhh.......eeee......hhhhhhhhhh......eeeee..........hhhhhhhhhhhhhh.....eeeeee..hhhhhh....hhhhhhhhhhhhh.....eeeee.hhhh...........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nar A   1 PKPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIRSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHNKITRDIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAA 289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Glyco_hydro_tim (488)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q08884_VICNA | Q08884)
molecular function
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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  Cis Peptide Bonds
    Glu A:138 - Pro A:139   [ RasMol ]  
    Gly A:38 - Phe A:39   [ RasMol ]  
    Trp A:261 - Asn A:262   [ RasMol ]  
 

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