1N7V - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III

Authors :   L. Xu, S. D. Benson, S. J. Butcher, D. H. Bamford, R. M. Burnett

Date :   18 Nov 02 (Deposition) - 08 Apr 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Bacteriophage Prd1, Viral Receptor-Binding, Beta-Propeller, Proline-Rich, Antibiotic-Resistance, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Xu, S. D. Benson, S. J. Butcher, D. H. Bamford, R. M. Burnett
The Receptor Binding Protein P2 Of Prd1, A Virus Targeting Antibiotic-Resistant Bacteria, Has A Novel Fold Suggesting Multiple Functions.
Structure V. 11 309 2003
PubMed-ID: 12623018 | Reference-DOI: 10.1016/S0969-2126(03)00023-6
(for further references see the PDB file header)

Molecule 1 - ADSORPTION PROTEIN P2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMG59
	Expression System Strain	:	HMS174
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	II
	Organism Scientific	:	ENTEROBACTERIA PHAGE PRD1
	Organism Taxid	:	10658
	Synonym	:	RECEPTOR-BINDING PROTEIN PRD1-P2

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CA	1	Ligand/Ion	CALCIUM ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:40 , LEU A:52 , HIS A:53 , HOH A:691	BINDING SITE FOR RESIDUE ACT A 560
2	AC2	SOFTWARE	HOH A:831	BINDING SITE FOR RESIDUE ACT A 561
3	AC3	SOFTWARE	ASP A:425 , LYS A:426 , SER A:462 , HOH A:734 , HOH A:735 , HOH A:832	BINDING SITE FOR RESIDUE CA A 601

(no "SS Bond" information available for 1N7V)

Asymmetric Unit

No.	Residues
1	Asn A:126	-	Pro A:127
2	Pro A:205	-	Pro A:206
3	Pro A:208	-	Pro A:209

(no "SAP(SNP)/Variant" information available for 1N7V)

(no "PROSITE Motif" information available for 1N7V)

(no "Exon" information available for 1N7V)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:533
 aligned with P2_BPPRD | P27378 from UniProtKB/Swiss-Prot  Length:591

    Alignment length:555
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551     
             P2_BPPRD     2 ANFNVPKLGVFPVAAVFDIDNVPEDSSATGSRWLPSIYQGGNYWGGGPQALHAQVSNFDSSNRLPYNPRTENNPAGNCAFAFNPFGQYISNISSAQSVHRRIYGIDLNDEPLFSPNAASITNGGNPTMSQDTGYHNIGPINTAYKAEIFRPVNPLPMSDTAPDPETLEPGQTEPLIKSDGVYSNSGIASFIFDRPVTEPNPNWPPLPPPVIPIIYPTPALGIGAAAAYGFGYQVTVYRWEEIPVEFIADPETCPAQPTTDKVIIRTTDLNPEGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGGLDKTTLLEIPRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEIGDALKIADDEFDSVDYFAYRGGVMFIGSARYTEGGDPLPIKYRAIIPGLP 556
               SCOP domains d1n7va_ A: Adsorption protein p2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1n7vA01 A:2-42,A:420-555                 1n7vA02                 1n7vA03 A:67-157,A:158-239,A:240-320 receptor-binding protein prd1-p2, domain 3            1n7vA03 A:67-157,A:158-239,A:240-320 receptor-binding protein prd1-p2, domain 3   1n7vA03                       A:67-157,A:158-239,A:240-320 receptor-binding prote1n7vA02 A:43-66,A:321-419 receptor-binding protein prd1-p2, domain 2                               1n7vA01 A:2-42,A:420-555 Pseudo beta propeller                                                                                          - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.eeee..eeeeeee...................hhh.ee....eeeeeeee......eee...................eee...hhhhhhhhhhhhh..........eehhhhhhhhhh...ee....eee..eee.eeeeeeee......eeeee......eeee..ee...........ee......eeee..........eeeee..hhhh.eeeeeeeeeeeeeeeee........----------------------..............eeee.......eeee..eeeeeeeeeeeeeeeeeeee...eeeeeee.........eeee.....eeee..eeeeee....eeeeeee....eeeeeeeee..eeeeeeeeeehhhhh.hhhhhhhhhhhhhh........ee...eeeehhhhhh...........eeee............eeeee..eeeeeee.........eeeeee.....eeeeehhhhhh..........eeeee..eeeeee............eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n7v A   2 ANFNVPKLGVFPVAAVFDIDNVPEDSSATGSRWLPSIYQGGNYWGGGPQALHAQVSNFDSSNRLPYNPRTENNPAGNCAFAFNPFGQYISNISSAQSVHRRIYGIDLNDEPLFSPNAASITNGGNPTMSQDTGYHNIGPINTAYKAEIFRPVNPLPMSDTAPDPETLEPGQTEPLIKSDGVYSNSGIASFIFDRPVTEPNPNWPPLPPPVIPIIYPTPALGIGAAAAYGFGYQVTVYRWEEIPVEF----------------------LNPEGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGGLDKTTLLEIPRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEIGDALKIADDEFDSVDYFAYRGGVMFIGSARYTEGGDPLPIKYRAIIPGLP 556
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241     |   -         -       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551     
                                                                                                                                                                                                                                                                               247                    270

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: Adsorption protein p2 (2)

Superfamily: Adsorption protein p2 (2)

Family: Adsorption protein p2 (2)

Protein domain: Adsorption protein p2 (2)

Bacteriophage PRD1 [TaxId: 10658] (2)

d1n7va_

(no "Pfam Domain" information available for 1N7V)

Asymmetric Unit(hide GO term definitions)

Chain A (P2_BPPRD | P27378)

biological process
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

Asymmetric Unit
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		Asn A:126 - Pro A:127	[ RasMol ]
		Pro A:205 - Pro A:206	[ RasMol ]
		Pro A:208 - Pro A:209	[ RasMol ]

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	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	1n7v
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	P2_BPPRD \| P27378	:	1n7u

1n7u	THE SAME PROTEIN WITH DIFFERENT SPACE GROUP

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