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(-) Description

Title :  SOLUTION STRUCTURE OF THE PWWP DOMAIN OF MOUSE HEPATOMA-DERIVED GROWTH FACTOR, RELATED PROTEIN 3
 
Authors :  N. Nameki, T. Kigawa, S. Koshiba, N. Kobayashi, N. Tochio, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  22 Oct 02  (Deposition) - 23 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Nuclear Translocation, Hdgf Family, Hath, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Hormone/Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Nameki, N. Tochio, S. Koshiba, M. Inoue, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, Y. Fujikura, M. Saito, M. Ikari, M. Watanabe, T. Terada, M. Shirouzu, M. Yoshida, H. Hirota, A. Tanaka, Y. Hayashizaki, P. Guntert, T. Kigawa, S. Yokoyama
Solution Structure Of The Pwwp Domain Of The Hepatoma-Derived Growth Factor Family.
Protein Sci. V. 14 756 2005
PubMed-ID: 15689505  |  Reference-DOI: 10.1110/PS.04975305
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEPATOMA-DERIVED GROWTH FACTOR, RELATED PROTEIN 3
    Chains: A
    Engineered: YES
    Expression System Plasmid: P020408-01
    Expression System Vector Type: PLASMID
    Fragment: PWWP DOMAIN
    Gene: 4632410H03
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS SYSTEM

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1N27)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N27)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PWWPPS50812 PWWP domain profile.HDGR3_MOUSE11-68  1A:11-68

(-) Exons   (0, 0)

(no "Exon" information available for 1N27)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with HDGR3_MOUSE | Q9JMG7 from UniProtKB/Swiss-Prot  Length:202

    Alignment length:112
                                    10        20        30        40        50        60        70        80        90       100       110  
          HDGR3_MOUSE     1 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQTIQQQSSSETEG 112
               SCOP domains d1n27a_ A: Hepatoma-derived growth factor, related protein 3                                                     SCOP domains
               CATH domains 1n27A00 A:1-96  [code=2.30.30.160, no name defined]                                                              CATH domains
               Pfam domains -------PWWP-1n27A01 A:8-80                                                      -------------------------------- Pfam domains
         Sec.struct. author .............eeeee.....eeeeee..............eeeee....eeeee.hhheeehhhh............hhhhhhhhhh----------------...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PWWP  PDB: A:11-68 UniProt: 11-68                         -------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1n27 A   1 GSSGSSGEYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIEN----------------SGPSSG  96
                                    10        20        30        40        50        60        70        80        90         -      | 94  
                                                                                                                    90               91
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Tudor (88)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (HDGR3_MOUSE | Q9JMG7)
molecular function
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0015631    tubulin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of tubulin, including microtubules.
biological process
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0046785    microtubule polymerization    The addition of tubulin heterodimers to one or both ends of a microtubule.
    GO:0007026    negative regulation of microtubule depolymerization    Any process that stops, prevents, or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol.
    GO:0031175    neuron projection development    The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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