1MOS - JenaLib

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Title :   ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH 2-AMINO-2-DEOXYGLUCITOL 6-PHOSPHATE

Authors :   A. Teplyakov, G. Obmolova, M. A. Badet-Denisot, B. Badet

Date :   15 Jul 98 (Deposition) - 29 Jul 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)
Biol. Unit 2: A  (6x)

Keywords :   Glutamine Amidotransferase, Transferase, Aminotransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Teplyakov, G. Obmolova, M. A. Badet-Denisot, B. Badet
The Mechanism Of Sugar Phosphate Isomerization By Glucosamine 6-Phosphate Synthase.
Protein Sci. V. 8 596 1999
PubMed-ID: 10091662
(for further references see the PDB file header)

Molecule 1 - GLUCOSAMINE 6-PHOSPHATE SYNTHASE
	Atcc	:	ATCC 25257
	Chains	:	A
	Collection	:	ATCC 25257
	EC Number	:	2.6.1.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	GLMS
	Expression System Plasmid	:	PMA200
	Expression System Strain	:	HB101
	Expression System Taxid	:	562
	Expression System Vector	:	PUC119
	Fragment	:	ISOMERASE DOMAIN
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	3000HFR

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A
Biological Unit 2 (6x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 6)

No.	Name	Count	Type	Full Name
1	AGP	1	Ligand/Ion	2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	NA	1	Ligand/Ion	SODIUM ION
4	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	AGP	2	Ligand/Ion	2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE
2	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	NA	-1	Ligand/Ion	SODIUM ION
4	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 30)

No.	Name	Count	Type	Full Name
1	AGP	6	Ligand/Ion	2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE
2	MES	6	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	NA	-1	Ligand/Ion	SODIUM ION
4	SO4	18	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:164 , ALA A:393	BINDING SITE FOR RESIDUE SO4 A 611
2	AC2	SOFTWARE	HIS A:465 , HIS A:466 , ASP A:513	BINDING SITE FOR RESIDUE SO4 A 612
3	AC3	SOFTWARE	GLY A:540 , GLN A:542	BINDING SITE FOR RESIDUE SO4 A 613
4	AC4	SOFTWARE	HOH A:22 , HOH A:23 , HOH A:26 , HOH A:73 , MES A:610	BINDING SITE FOR RESIDUE NA A 614
5	AC5	SOFTWARE	HOH A:13 , HOH A:14 , HOH A:61 , HOH A:62 , HOH A:82 , HOH A:147 , CYS A:300 , GLY A:301 , THR A:302 , SER A:303 , SER A:347 , GLN A:348 , SER A:349 , THR A:352 , VAL A:399 , ALA A:400 , SER A:401 , LYS A:485 , GLU A:488 , HIS A:504	BINDING SITE FOR RESIDUE AGP A 609
6	AC6	SOFTWARE	HOH A:29 , HOH A:55 , HOH A:59 , ALA A:520 , ASN A:522 , GLU A:569 , NA A:614	BINDING SITE FOR RESIDUE MES A 610

(no "SS Bond" information available for 1MOS)

(no "Cis Peptide Bond" information available for 1MOS)

(no "SAP(SNP)/Variant" information available for 1MOS)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GLMS_ECOLI	286-426 458-599	2	A:285-425 A:457-598

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GLMS_ECOLI	286-426 458-599	4	A:285-425 A:457-598

Biological Unit 2 (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GLMS_ECOLI	286-426 458-599	12	A:285-425 A:457-598

(no "Exon" information available for 1MOS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:367
 aligned with GLMS_ECOLI | P17169 from UniProtKB/Swiss-Prot  Length:609

    Alignment length:367
                                   252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       
           GLMS_ECOLI   243 AGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 609
               SCOP domains d1mosa_ A: Isomerase domain of glucosamine 6-phosphate synthase (GLMS)                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -1mosA01 A:243-445,A:594-608 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                           1mosA02 A:446-593 Glucose-6-phosphate isomerase like protein; domain 1                                                                              1mosA01         CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIS-1mosA01 A:460-591                                                                                                               ----------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIS-1mosA02 A:460-591                                                                                                               ----------------- Pfam domains (2)
         Sec.struct. author .........hhhhhhh.hhhhhhhhh...........hhh...hhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh....eeeeehhhhh.........eeeeeee.....hhhhhhhhhhhh....eeeeee.....hhhh...eeee............hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeeeehhhhhh.hhhh....eeeeee...hhhhhhhhhhhhhhhhh...eeeeeehhh.......eeeeee....hhhhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------SIS  PDB: A:285-425 UniProt: 286-426                                                                                                         -------------------------------SIS  PDB: A:457-598 UniProt: 458-599                                                                                                          ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mos A 242 AGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 608
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: SIS domain (85)

Superfamily: SIS domain (85)

Family: double-SIS domain (16)

Protein domain: Isomerase domain of glucosamine 6-phosphate synthase (GLMS) (5)

Escherichia coli [TaxId: 562] (5)

d1mosa_

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Glucose-6-phosphate isomerase like protein; domain 1 (105)

Escherichia coli. Organism_taxid: 562. Strain: 3000hfr. (1)

1a	1mosA01	A:243-445,A:594-608
1b	1mosA02	A:446-593

Asymmetric Unit

Clans(

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Families(

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Organisms( (-)

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Clan: SIS (53)

Family: SIS (23)

Escherichia coli (strain K12) (7)

1a	SIS-1mosA01	A:460-591
1b	SIS-1mosA02	A:460-591

Asymmetric Unit(hide GO term definitions)

Chain A (GLMS_ECOLI | P17169)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0004360	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	Catalysis of the reaction: beta-D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
	GO:1901137	carbohydrate derivative biosynthetic process	The chemical reactions and pathways resulting in the formation of carbohydrate derivative.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006002	fructose 6-phosphate metabolic process	The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
	GO:0006541	glutamine metabolic process	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

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