1MOE - JenaLib

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Title :   THE THREE-DIMENSIONAL STRUCTURE OF AN ENGINEERED SCFV T84.66 DIMER OR DIABODY IN VL TO VH LINKAGE.

Authors :   J. A. Carmichael, B. E. Power, T. P. J. Garrett, P. J. Yazaki, J. E. Shively, A. A. Raubischek, A. M. Wu, P. J. Hudson

Date :   09 Sep 02 (Deposition) - 18 Mar 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Anti Carcinoembryonic Antigen, T84. 66, Diabody, Dimer, Scfv, Variable Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. A. Carmichael, B. E. Power, T. P. Garrett, P. J. Yazaki, J. E. Shively, A. A. Raubischek, A. M. Wu, P. J. Hudson
The Crystal Structure Of An Anti-Cea Scfv Diabody Assembled From T84. 66 Scfvs In Vl-To-Vh Orientation: Implications For Diabody Flexibility
J. Mol. Biol. V. 326 341 2003
PubMed-ID: 12559905 | Reference-DOI: 10.1016/S0022-2836(02)01428-6
(for further references see the PDB file header)

Molecule 1 - ANTI-CEA MAB T84.66
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	MUS MUSCULUS
	Expression System Cell	:	MYELOMA NSO CELLS
	Expression System Common	:	HOUSE MOUSE
	Expression System Gene	:	T84.66
	Expression System Plasmid	:	PEE12
	Expression System Taxid	:	10090
	Expression System Vector	:	SHUTTLE
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-240
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	IMMUNOGLOBULIN VARIABLE DOMAINS LINKED VL TO VH WITH (GGGSGGGG)
	Synonym	:	T84.66 ANTI-CEA SCFV DIMER

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL B:13 , SER B:14 , GLN B:17 , LYS B:111	BINDING SITE FOR RESIDUE SO4 B 301
2	AC2	SOFTWARE	LYS A:43 , GLN A:46 , LYS A:49	BINDING SITE FOR RESIDUE SO4 A 302
3	AC3	SOFTWARE	LYS B:43 , GLN B:46 , LYS B:49	BINDING SITE FOR RESIDUE SO4 B 303

Asymmetric Unit

No.	Residues
1	A:23	-	A:92
2	A:141	-	A:215
3	B:23	-	B:92
4	B:141	-	B:215

Asymmetric Unit

No.	Residues
1	Ser A:7	-	Pro A:8
2	Asp A:80	-	Pro A:81
3	Asp A:98	-	Pro A:99
4	Ser B:7	-	Pro B:8
5	Asp B:80	-	Pro B:81
6	Asp B:98	-	Pro B:99

(no "SAP(SNP)/Variant" information available for 1MOE)

(no "PROSITE Motif" information available for 1MOE)

(no "Exon" information available for 1MOE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:240
 aligned with KV3A8_MOUSE | P01660 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:240
                                                                                                                                        111                                                                                                                                 
                                    10        20        30        40        50        60        70        80        90       100       110|        -         -         -         -         -         -         -         -         -         -         -         -         -
          KV3A8_MOUSE     1 DIVLTQSPASLAVSLGQRATISCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIK---------------------------------------------------------------------------------------------------------------------------------   -
               SCOP domains d1moea1 A:1-119 Immunoglobulin light chain kappa variable domain, VL-kappa                                             d1moea2 A:120-240 Immunoglobulin heavy chain variable domain, VH                                                          SCOP domains
               CATH domains 1moeA01 A:1-112 Immunoglobulins                                                                                 1moeA02 A:113-211 Immunoglobulins                                                                  ----------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee....ee..ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee...........eeeee...........eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1moe A   1 DIVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSDYAMAYWGQGTSVTVSS 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Chain A from PDB  Type:PROTEIN  Length:240
 aligned with Q5R3X1_MOUSE | Q5R3X1 from UniProtKB/TrEMBL  Length:114

    Alignment length:240
                                                                                                                                                                                                                                                     93     99              
                                                                                                                                                         1                                                                                         92 |   98 |              
                                     -         -         -         -         -         -         -         -         -         -         -         -     |   5        15        25        35        45        55        65        75        85      | 94   | | 103       113
         Q5R3X1_MOUSE     - -----------------------------------------------------------------------------------------------------------------------------SGAELVKPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCAR-GWLRRD-AMDYWGQGTSVTVSS 113
               SCOP domains d1moea1 A:1-119 Immunoglobulin light chain kappa variable domain, VL-kappa                                             d1moea2 A:120-240 Immunoglobulin heavy chain variable domain, VH                                                          SCOP domains
               CATH domains 1moeA01 A:1-112 Immunoglobulins                                                                                 1moeA02 A:113-211 Immunoglobulins                                                                  ----------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee....ee..ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee...........eeeee...........eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1moe A   1 DIVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSDYAMAYWGQGTSVTVSS 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Chain B from PDB  Type:PROTEIN  Length:240
 aligned with KV3A8_MOUSE | P01660 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:240
                                                                                                                                        111                                                                                                                                 
                                    10        20        30        40        50        60        70        80        90       100       110|        -         -         -         -         -         -         -         -         -         -         -         -         -
          KV3A8_MOUSE     1 DIVLTQSPASLAVSLGQRATISCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIK---------------------------------------------------------------------------------------------------------------------------------   -
               SCOP domains d1moeb1 B:1-119 Immunoglobulin light chain kappa variable domain, VL-kappa                                             d1moeb2 B:120-240 Immunoglobulin heavy chain variable domain, VH                                                          SCOP domains
               CATH domains 1moeB01 B:1-112 Immunoglobulins                                                                                 1moeB02 B:113-211 Immunoglobulins                                                                  ----------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee....ee..ee.eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee...........eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1moe B   1 DIVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSDYAMAYWGQGTSVTVSS 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Chain B from PDB  Type:PROTEIN  Length:240
 aligned with Q5R3X1_MOUSE | Q5R3X1 from UniProtKB/TrEMBL  Length:114

    Alignment length:240
                                                                                                                                                                                                                                                     93     99              
                                                                                                                                                         1                                                                                         92 |   98 |              
                                     -         -         -         -         -         -         -         -         -         -         -         -     |   5        15        25        35        45        55        65        75        85      | 94   | | 103       113
         Q5R3X1_MOUSE     - -----------------------------------------------------------------------------------------------------------------------------SGAELVKPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCAR-GWLRRD-AMDYWGQGTSVTVSS 113
               SCOP domains d1moeb1 B:1-119 Immunoglobulin light chain kappa variable domain, VL-kappa                                             d1moeb2 B:120-240 Immunoglobulin heavy chain variable domain, VH                                                          SCOP domains
               CATH domains 1moeB01 B:1-112 Immunoglobulins                                                                                 1moeB02 B:113-211 Immunoglobulins                                                                  ----------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee....ee..ee.eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee...........eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1moe B   1 DIVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSDYAMAYWGQGTSVTVSS 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1moeA01	A:1-112
1b	1moeB01	B:1-112
1c	1moeA02	A:113-211
1d	1moeB02	B:113-211

(no "Pfam Domain" information available for 1MOE)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5R3X1_MOUSE | Q5R3X1)

Chain A,B (KV3A8_MOUSE | P01660)

molecular function
	GO:0003823		antigen binding		Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

Asymmetric Unit
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	Cis Peptide Bonds
		Asp A:80 - Pro A:81	[ RasMol ]
		Asp A:98 - Pro A:99	[ RasMol ]
		Asp B:80 - Pro B:81	[ RasMol ]
		Asp B:98 - Pro B:99	[ RasMol ]
		Ser A:7 - Pro A:8	[ RasMol ]
		Ser B:7 - Pro B:8	[ RasMol ]

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	KV3A8_MOUSE \| P01660	:	1ejo 1i8i 1i8k 1j05 1qfw 2r29 2r69 2r6p 2vl5 3bsz 4nja

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Ligands, Modified Residues, Ions (1, 3)

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