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(-) Description

Title :  STRUCTURAL GENOMICS
 
Authors :  S. Korolev, T. Skarina, A. Joachimiak, A. Edwards, A. Savchenko, Midwe For Structural Genomics (Mcsg)
Date :  30 Aug 02  (Deposition) - 22 Apr 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Korolev, T. Skarina, A. Joachimiak, A. Edwards, A. Savchenko
Structural Genomics
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN (CRP REGION)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ML8)

(-) Sites  (0, 0)

(no "Site" information available for 1ML8)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:47 -A:113

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ML8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ML8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ML8)

(-) Exons   (0, 0)

(no "Exon" information available for 1ML8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with YHFA_ECO57 | P0ADX3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
           YHFA_ECO57     1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
               SCOP domains d1ml8a_ A: Hypothetical protein in CRP region                                                                                          SCOP domains
               CATH domains 1ml8A01 A:1-34                    1ml8A02 A:35-134  [code=3.30.300.20, no na   me defined]                                             CATH domains
               Pfam domains ---------------------------OsmC-1ml8A01 A:28-128                                                                                ------ Pfam domains
         Sec.struct. author ...eeeeee..eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..---..eeeeeeeeeeee...hhhhhhhhhhhhhhh.hhhhhhhh...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ml8 A   1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE---RLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
                                    10        20        30        40        50        60        70     |  80        90       100       110       120       130    
                                                                                                      76  80                                                      


Chain A from PDB  Type:PROTEIN  Length:131
 aligned with YHFA_ECOL6 | P0ADX2 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
           YHFA_ECOL6     1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
               SCOP domains d1ml8a_ A: Hypothetical protein in CRP region                                                                                          SCOP domains
               CATH domains 1ml8A01 A:1-34                    1ml8A02 A:35-134  [code=3.30.300.20, no na   me defined]                                             CATH domains
               Pfam domains ---------------------------OsmC-1ml8A01 A:28-128                                                                                ------ Pfam domains
         Sec.struct. author ...eeeeee..eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..---..eeeeeeeeeeee...hhhhhhhhhhhhhhh.hhhhhhhh...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ml8 A   1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE---RLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
                                    10        20        30        40        50        60        70     |  80        90       100       110       120       130    
                                                                                                      76  80                                                      


Chain A from PDB  Type:PROTEIN  Length:131
 aligned with YHFA_ECOLI | P0ADX1 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
           YHFA_ECOLI     1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
               SCOP domains d1ml8a_ A: Hypothetical protein in CRP region                                                                                          SCOP domains
               CATH domains 1ml8A01 A:1-34                    1ml8A02 A:35-134  [code=3.30.300.20, no na   me defined]                                             CATH domains
               Pfam domains ---------------------------OsmC-1ml8A01 A:28-128                                                                                ------ Pfam domains
         Sec.struct. author ...eeeeee..eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..---..eeeeeeeeeeee...hhhhhhhhhhhhhhh.hhhhhhhh...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ml8 A   1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE---RLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
                                    10        20        30        40        50        60        70     |  80        90       100       110       120       130    
                                                                                                      76  80                                                      


Chain A from PDB  Type:PROTEIN  Length:131
 aligned with YHFA_SHIFL | P0ADX4 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
           YHFA_SHIFL     1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
               SCOP domains d1ml8a_ A: Hypothetical protein in CRP region                                                                                          SCOP domains
               CATH domains 1ml8A01 A:1-34                    1ml8A02 A:35-134  [code=3.30.300.20, no na   me defined]                                             CATH domains
               Pfam domains ---------------------------OsmC-1ml8A01 A:28-128                                                                                ------ Pfam domains
         Sec.struct. author ...eeeeee..eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..---..eeeeeeeeeeee...hhhhhhhhhhhhhhh.hhhhhhhh...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ml8 A   1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE---RLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA 134
                                    10        20        30        40        50        60        70     |  80        90       100       110       120       130    
                                                                                                      76  80
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: OsmC] (11)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ML8)

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