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(-) Description

Title :  CRYSTALLIZATION, STRUCTURE DETERMINATION AND LEAST-SQUARES REFINEMENT TO 1.75 ANGSTROMS RESOLUTION OF THE FATTY-ACID-BINDING PROTEIN ISOLATED FROM MANDUCA SEXTA L
 
Authors :  M. Benning, H. M. Holden
Date :  20 Jul 92  (Deposition) - 31 Jan 94  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Benning, A. F. Smith, M. A. Wells, H. M. Holden
Crystallization, Structure Determination And Least-Squares Refinement To 1. 75 A Resolution Of The Fatty-Acid-Binding Protein Isolated From Manduca Sexta L.
J. Mol. Biol. V. 228 208 1992
PubMed-ID: 1447782  |  Reference-DOI: 10.1016/0022-2836(92)90501-A

(-) Compounds

Molecule 1 - INSECT FATTY ACID BINDING PROTEIN
    Chains: A
    Engineered: YES
    Organism Common: TOBACCO HORNWORM
    Organism Scientific: MANDUCA SEXTA
    Organism Taxid: 7130

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2PLM1Ligand/IonPALMITIC ACID
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:39 , ASN A:50 , TYR A:83 , HIS A:92 , LYS A:105 , PLM A:133BINDING SITE FOR RESIDUE SO4 A 200
2AC2SOFTWAREGLN A:39 , GLY A:99 , VAL A:114 , ARG A:127 , TYR A:129 , SO4 A:200BINDING SITE FOR RESIDUE PLM A 133

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MDC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MDC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MDC)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FABPPS00214 Cytosolic fatty-acid binding proteins signature.FABP2_MANSE6-23  1A:5-22

(-) Exons   (0, 0)

(no "Exon" information available for 1MDC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:132
 aligned with FABP2_MANSE | P31417 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
          FABP2_MANSE     1 MSYLGKVYSLVKQENFDGFLKSAGLSDDKIQALVSDKPTQKMEANGDSYSITSTGIGGERTVSFKSGVEFDDVIGAGESVKSMYTVDGNVVTHVVKGDAGVATFKKEYNGDDLVVTITSSNWDGVARRYYKA 132
               SCOP domains d1mdca_ A: Fatty acid-binding protein                                                                                                SCOP domains
               CATH domains -1mdcA00 A:1-131  [code=2.40.128.20, no name defined]                                                                                CATH domains
               Pfam domains ---Lipocalin-1mdcA01 A:3-126                                                                                                   ----- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhhhh...hhhhhhhhh..eeeeeee....eeeeee....eeeeee....eeeee....eeeeeeeee....eeeeee....eeeeeeee....eeeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----FABP  PDB: A:5-22 ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1mdc A   0 xSYLGKVYSLVKQENFDGFLKSAGLSDDKIQALVSDKPTQKMEANGDSYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTHVVKGDAGVATFKKEYNGDDLVVTITSSNWDGVARRYYKA 131
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129  
                            |                                                                                                                                   
                            0-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Calycin (163)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FABP2_MANSE | P31417)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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