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(-) Description

Title :  FASCICULIN2-MOUSE ACETYLCHOLINESTERASE COMPLEX
 
Authors :  Y. Bourne, P. Taylor, P. Marchot
Date :  21 Nov 95  (Deposition) - 03 Apr 96  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,F
Biol. Unit 1:  A,F  (2x)
Keywords :  Hydrolase, Serine Esterase, Synapse, Venom, Toxin, Complex (Hydrolase-Toxin) Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Bourne, P. Taylor, P. Marchot
Acetylcholinesterase Inhibition By Fasciculin: Crystal Structure Of The Complex.
Cell(Cambridge, Mass. ) V. 83 503 1995
PubMed-ID: 8521480  |  Reference-DOI: 10.1016/0092-8674(95)90128-0

(-) Compounds

Molecule 1 - ACETYLCHOLINESTERASE
    Cell Line293
    ChainsA
    EC Number3.1.1.7
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System CommonHUMAN
    Expression System GeneMOUSE ACHE
    Expression System PlasmidLAMBDA-ZAP AND LAMBDA-FIX CDNA AND GENOMIC DNA
    Expression System Strain293
    Expression System Taxid9606
    GeneMOUSE ACHE
    OrganBRAIN (CDNA)
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    StrainBLACK6-CBA CROSS F1
    SynonymMACHE
 
Molecule 2 - FASCICULIN 2
    Cell Line293
    ChainsF
    OrganBRAIN (CDNA)
    Organism CommonEASTERN GREEN MAMBA
    Organism ScientificDENDROASPIS ANGUSTICEPS
    Organism Taxid8618
    SynonymTOXIN F-VII, FAS2, TOXIN TAI
    TissueVENOM

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AF
Biological Unit 1 (2x)AF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:345 , SER A:347 , ASN A:350 , SER A:352 , LEU A:353BINDING SITE FOR RESIDUE NAG A 544
2CATAUTHORSER A:203 , GLU A:334 , HIS A:447 , TRP A:86LOCATED AT THE BOTTOM OF A NARROW GORGE
3PASAUTHORTYR A:72 , TYR A:124 , GLN A:279 , TYR A:341BINDING SITE FOR FAS2 LOOP II

(-) SS Bonds  (7, 7)

Asymmetric Unit
No.Residues
1A:69 -A:96
2A:257 -A:272
3A:409 -A:529
4F:3 -F:22
5F:17 -F:39
6F:41 -F:52
7F:53 -F:59

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Tyr A:105 -Pro A:106
2Pro F:30 -Pro F:31
3Ser F:55 -Pro F:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MAH)

(-) PROSITE Motifs  (3, 3)

Asymmetric Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SNAKE_TOXINPS00272 Snake toxins signature.3SE1_DENAN38-56  1F:38-56
3SE2_DENAN38-56  1F:38-56
2CARBOXYLESTERASE_B_2PS00941 Carboxylesterases type-B signature 2.ACES_MOUSE125-135  1A:94-104
3CARBOXYLESTERASE_B_1PS00122 Carboxylesterases type-B serine active site.ACES_MOUSE221-236  1A:190-205
Biological Unit 1 (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SNAKE_TOXINPS00272 Snake toxins signature.3SE1_DENAN38-56  2F:38-56
3SE2_DENAN38-56  2F:38-56
2CARBOXYLESTERASE_B_2PS00941 Carboxylesterases type-B signature 2.ACES_MOUSE125-135  2A:94-104
3CARBOXYLESTERASE_B_1PS00122 Carboxylesterases type-B serine active site.ACES_MOUSE221-236  2A:190-205

(-) Exons   (0, 0)

(no "Exon" information available for 1MAH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:533
 aligned with ACES_MOUSE | P21836 from UniProtKB/Swiss-Prot  Length:614

    Alignment length:540
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574
           ACES_MOUSE    35 EDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTGDFQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRFLPKLLSAT 574
               SCOP domains d1maha_ A: Acetylcholinesterase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1mahA00 A:4-543  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains COesterase-1mahA01 A:4-532                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ----------- Pfam domains
         Sec.struct. author .....eeee..eeee.eeeee..eeeeee..........hhh.............eee...................hhhhhh.............eeeee.........eee..............hhh.hhhhhhhh..eeee.....hhhhh............hhhhhhhhhhhhhhh.hhhh.......eeeee.hhhhhhhhhhh.hhhhhh..eeeee............hhhhhhhhhhhhhhh..-------..hhhhhhhhh..hhhhhhhhhh........................hhhhhhh......eeeeeee...hhhhhhh..............hhhhhhhhhhh.....hhhhhhhhhhh........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...eeeeeee..........hhh.......hhhh..hhh.......hhhhhhhhhhhhhhhhhhh.......................eeeee.....eeee...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------CARBOXYLEST-------------------------------------------------------------------------------------CARBOXYLESTERASE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1mah A   4 EDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGC-------NDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTGDFQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRFLPKLLSAT 543
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253   |     - |     273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543
                                                                                                                                                                                                                                                                                       257     265                                                                                                                                                                                                                                                                                      

Chain F from PDB  Type:PROTEIN  Length:61
 aligned with 3SE1_DENAN | P0C1Y9 from UniProtKB/Swiss-Prot  Length:61

    Alignment length:61
                                    10        20        30        40        50        60 
           3SE1_DENAN     1 TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDYLEVKCCTSPDKCNY  61
               SCOP domains d1mahf_ F: Fasciculin                                         SCOP domains
               CATH domains 1mahF00 F:1-61 CD59                                           CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeee.....eeeeee.........eee........eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------SNAKE_TOXIN        ----- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 1mah F   1 TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDNLEVKCCTSPDKCNY  61
                                    10        20        30        40        50        60 

Chain F from PDB  Type:PROTEIN  Length:61
 aligned with 3SE2_DENAN | P0C1Z0 from UniProtKB/Swiss-Prot  Length:61

    Alignment length:61
                                    10        20        30        40        50        60 
           3SE2_DENAN     1 TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDNLEVKCCTSPDKCNY  61
               SCOP domains d1mahf_ F: Fasciculin                                         SCOP domains
               CATH domains 1mahF00 F:1-61 CD59                                           CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeee.....eeeeee.........eee........eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------SNAKE_TOXIN        ----- PROSITE (2)
                 Transcript ------------------------------------------------------------- Transcript
                 1mah F   1 TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDNLEVKCCTSPDKCNY  61
                                    10        20        30        40        50        60 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (32, 34)

Asymmetric Unit(hide GO term definitions)
Chain A   (ACES_MOUSE | P21836)
molecular function
    GO:0042166    acetylcholine binding    Interacting selectively and non-covalently with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions.
    GO:0003990    acetylcholinesterase activity    Catalysis of the reaction: acetylcholine + H2O = choline + acetate.
    GO:0052689    carboxylic ester hydrolase activity    Catalysis of the hydrolysis of a carboxylic ester bond.
    GO:0004104    cholinesterase activity    Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion.
    GO:0005518    collagen binding    Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0043236    laminin binding    Interacting selectively and non-covalently with laminins, glycoproteins that are major constituents of the basement membrane of cells.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0043621    protein self-association    Interacting selectively and non-covalently with a domain within the same polypeptide.
    GO:0017171    serine hydrolase activity    Catalysis of the hydrolysis of a substrate by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006581    acetylcholine catabolic process    The chemical reactions and pathways resulting in the breakdown of acetylcholine, the acetic acid ester of the organic base choline.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0042135    neurotransmitter catabolic process    The chemical reactions and pathways resulting in the breakdown of any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell.
    GO:0045212    neurotransmitter receptor biosynthetic process    The chemical reactions and pathways resulting in the formation of neurotransmitter receptors.
    GO:0002076    osteoblast development    The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0031623    receptor internalization    A receptor-mediated endocytosis process that results in the movement of receptors from the plasma membrane to the inside of the cell. The process begins when cell surface receptors are monoubiquitinated following ligand-induced activation. Receptors are subsequently taken up into endocytic vesicles from where they are either targeted to the lysosome or vacuole for degradation or recycled back to the plasma membrane.
    GO:0001919    regulation of receptor recycling    Any process that modulates the frequency, rate, or extent of receptor recycling.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0005605    basal lamina    A thin sheet of proteoglycans and glycoproteins, especially laminin, secreted by cells as an extracellular matrix.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031594    neuromuscular junction    The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to a change in post-synaptic potential.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

Chain F   (3SE2_DENAN | P0C1Z0)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain F   (3SE1_DENAN | P0C1Y9)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        3SE1_DENAN | P0C1Y91b41 1f8u 1fas 1fsc 1fss 1ku6
        3SE2_DENAN | P0C1Z01b41 1f8u 1fas 1fsc 1fss 1ku6 2x8b 4bdt 4ey8
        ACES_MOUSE | P218361c2b 1c2o 1j06 1j07 1ku6 1maa 1n5m 1n5r 1q83 1q84 2c0p 2c0q 2gyu 2gyv 2gyw 2h9y 2ha0 2ha2 2ha3 2ha4 2ha5 2ha6 2ha7 2jey 2jez 2jf0 2jge 2jgf 2jgi 2jgj 2jgk 2jgl 2jgm 2whp 2whq 2whr 2wls 2wu3 2wu4 2xud 2xuf 2xug 2xuh 2xui 2xuj 2xuk 2xuo 2xup 2xuq 2y2u 2y2v 3dl4 3dl7 3zlt 3zlu 3zlv 4a16 4a23 4ara 4arb 4b7z 4b80 4b81 4b82 4b83 4b84 4b85 4bc0 4bc1 4btl 5dti 5dtj 5ehn 5ehq 5ehz 5eia 5eie 5eih 5fkj 5fpp 5fum 5hcu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1MAH)