1M9W - JenaLib

Title :   STUDY OF ELECTROSTATIC POTENTIAL SURFACE DISTRIBUTION USING HIGH RESOLUTION SIDE-CHAIN CONFORMATION DETERMINED BY NMR

Authors :   D. Monleon, B. Celda

Date :   30 Jul 02 (Deposition) - 14 Aug 02 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (10x)

Keywords :   Sidechain Orientation, Congen, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Monleon, B. Celda
Study Of Electrostatic Potential Surface Distribution Of Wild-Type Plastocyanin Synechocystis Solution Structure Determined By Homonuclear Nmr.
Biopolymers V. 70 212 2003
PubMed-ID: 14517909 | Reference-DOI: 10.1002/BIP.10472
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 20)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:98
 aligned with PLAS_SYNY3 | P21697 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:98
                                    38        48        58        68        78        88        98       108       118        
           PLAS_SYNY3    29 ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE 126
               SCOP domains d1m9wa_ A: Plastocyanin                                                                            SCOP domains
               CATH domains 1m9wA00 A:1-98 Cupredoxins -  blue copper proteins                                                 CATH domains
               Pfam domains --Copper-bind-1m9wA01 A:3-98                                                                       Pfam domains
         Sec.struct. author .....ee........ee..eeee....ee..ee........ee......hhhhh................ee.....eeeee.hhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------COPPER_BLUE    ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1m9w A   1 ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE  98
                                    10        20        30        40        50        60        70        80        90

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

NMR Structure(hide GO term definitions)

Chain A (PLAS_SYNY3 | P21697)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
	GO:0042651	thylakoid membrane	The pigmented membrane of any thylakoid.

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	Cis Peptide Bonds
		Glu A:17 - Pro A:18	[ RasMol ]
		Ser A:37 - Pro A:38	[ RasMol ]

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