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(-) Description

Title :  RELAXATION-BASED REFINED STRUCTURE OF CHLAMYDOMONAS OUTER ARM DYNEIN LIGHT CHAIN 1
 
Authors :  H. W. Wu, M. W. Maciejewski, A. Marintchev, S. E. Benashski, G. P. Mullen, S. M. King
Date :  29 Jul 02  (Deposition) - 04 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Leucine-Rich Repeat, Relaxation, Structural Refinement, Backbone Dynamics, Structure From Molmol, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Wu, M. Blackledge, M. W. Maciejewski, G. P. Mullen, S. M. King
Relaxation-Based Structure Refinement And Backbone Molecular Dynamics Of The Dynein Motor Domain-Associated Light Chain
Biochemistry V. 42 57 2003
PubMed-ID: 12515539  |  Reference-DOI: 10.1021/BI026762J
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OUTER ARM DYNEIN LIGHT CHAIN 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET16B
    Expression System Strain1132D(-)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificCHLAMYDOMONAS REINHARDTII
    Organism Taxid3055

 Structural Features

(-) Chains, Units

  
NMR Structure (15x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M9L)

(-) Sites  (0, 0)

(no "Site" information available for 1M9L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M9L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M9L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M9L)

(-) PROSITE Motifs  (1, 5)

NMR Structure (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.DNAL1_CHLRE49-70
71-92
94-115
116-137
141-162
  5A:49-70
A:71-92
A:94-115
A:116-137
A:141-162

(-) Exons   (0, 0)

(no "Exon" information available for 1M9L)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:198
 aligned with DNAL1_CHLRE | Q9XHH2 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        
          DNAL1_CHLRE     1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198
               SCOP domains d1m9la_ A: Outer arm dynein light chain 1                                                                                                                                                              SCOP domains
               CATH domains 1m9lA00 A:1-198 Ribonuclease Inhibitor                                                                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------LRR_4-1m9lA01 A:93-138                        ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..........ee..........hhhhhhhhhhh.eee..eeee....hhhhhh...eee..eeee....hhhhhhhhh.eee..eee..hhhhhhhhhhh.eeee.eee..hhhhhhhhh......eeee..hhhhhhhh...hhhhhhhhhhhhh....ee.hhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------LRR  PDB: A:49-70     LRR  PDB: A:71-92     -LRR  PDB: A:94-115    LRR  PDB: A:116-137   ---LRR  PDB: A:141-162   ------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m9l A   1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: LRR (77)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (DNAL1_CHLRE | Q9XHH2)
molecular function
    GO:0003774    motor activity    Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate.
cellular component
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005929    cilium    A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0030286    dynein complex    Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0031514    motile cilium    A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell.
    GO:0036157    outer dynein arm    Outer arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. Outer dynein arms contain 2-3 heavy chains, two or more intermediate chains and a cluster of 4-8 light chains. Inner and outer dynein arms have different functions in the generation of microtubule-based motility.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNAL1_CHLRE | Q9XHH21ds9

(-) Related Entries Specified in the PDB File

1ds9 SOLUTION STRUCTURE OF CHLAMYDOMONAS OUTER ARM DYNEIN LIGHT CHAIN 1