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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-19 RNA
 
Authors :  X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall
Date :  26 Jul 02  (Deposition) - 25 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,E  (1x)
Biol. Unit 2:  B,D,F  (1x)
Keywords :  Pumilio-Homology Domain, Puf Domain, Nanos Response Element, Rna Binding Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall
Modular Recognition Of Rna By A Human Pumilio-Homology Domain
Cell(Cambridge, Mass. ) V. 110 501 2002
PubMed-ID: 12202039  |  Reference-DOI: 10.1016/S0092-8674(02)00873-5
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3'
    ChainsC
    EngineeredYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
    SyntheticYES
 
Molecule 2 - 5'-R(P*UP*GP*UP*AP*UP*AP*U)-3'
    ChainsD
    EngineeredYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
    SyntheticYES
 
Molecule 3 - 5'-R(P*UP*UP*GP*UP*CP*CP*AP*G)-3'
    ChainsE
    EngineeredYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
    SyntheticYES
 
Molecule 4 - 5'-R(P*UP*GP*UP*CP*CP*AP*G)-3'
    ChainsF
    EngineeredYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
    SyntheticYES
 
Molecule 5 - PUMILIO 1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPTYB3
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentPUMILIO-HOMOLOGY DOMAIN, RESIDUES 828-1176
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A C E 
Biological Unit 2 (1x) B D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M8W)

(-) Sites  (0, 0)

(no "Site" information available for 1M8W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M8W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M8W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M8W)

(-) PROSITE Motifs  (2, 18)

Asymmetric Unit (2, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUM_HDPS50303 Pumilio homology domain (PUM-HD) profile.PUM1_HUMAN828-1168
 
  2A:828-1167
B:828-1168
2PUMPS50302 Pumilio RNA-binding repeat profile.PUM1_HUMAN848-883
 
884-919
 
920-955
 
956-991
 
992-1027
 
1028-1063
 
1064-1099
 
1103-1142
 
  16A:848-883
B:848-883
A:884-919
B:884-919
A:920-955
B:920-955
A:956-991
B:956-991
A:992-1027
B:992-1027
A:1028-1063
B:1028-1063
A:1064-1099
B:1064-1099
A:1103-1142
B:1103-1142
Biological Unit 1 (2, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUM_HDPS50303 Pumilio homology domain (PUM-HD) profile.PUM1_HUMAN828-1168
 
  1A:828-1167
-
2PUMPS50302 Pumilio RNA-binding repeat profile.PUM1_HUMAN848-883
 
884-919
 
920-955
 
956-991
 
992-1027
 
1028-1063
 
1064-1099
 
1103-1142
 
  8A:848-883
-
A:884-919
-
A:920-955
-
A:956-991
-
A:992-1027
-
A:1028-1063
-
A:1064-1099
-
A:1103-1142
-
Biological Unit 2 (2, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUM_HDPS50303 Pumilio homology domain (PUM-HD) profile.PUM1_HUMAN828-1168
 
  1-
B:828-1168
2PUMPS50302 Pumilio RNA-binding repeat profile.PUM1_HUMAN848-883
 
884-919
 
920-955
 
956-991
 
992-1027
 
1028-1063
 
1064-1099
 
1103-1142
 
  8-
B:848-883
-
B:884-919
-
B:920-955
-
B:956-991
-
B:992-1027
-
B:1028-1063
-
B:1064-1099
-
B:1103-1142

(-) Exons   (8, 16)

Asymmetric Unit (8, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1fENST000002570751fENSE00001830352chr1:31538545-3153846383PUM1_HUMAN-00--
1.3cENST000002570753cENSE00002154901chr1:31532424-31532051374PUM1_HUMAN1-1211210--
1.5aENST000002570755aENSE00001171922chr1:31501711-3150164369PUM1_HUMAN122-144230--
1.6ENST000002570756ENSE00001171914chr1:31479949-31479841109PUM1_HUMAN145-181370--
1.7ENST000002570757ENSE00001171904chr1:31478878-31478700179PUM1_HUMAN181-240600--
1.8bENST000002570758bENSE00000916523chr1:31468067-31467901167PUM1_HUMAN241-296560--
1.9bENST000002570759bENSE00000916522chr1:31465507-31465237271PUM1_HUMAN296-386910--
1.11bENST0000025707511bENSE00000916520chr1:31454252-3145415994PUM1_HUMAN387-418320--
1.12cENST0000025707512cENSE00001171885chr1:31453010-31452909102PUM1_HUMAN418-452350--
1.13bENST0000025707513bENSE00000916518chr1:31447649-31447498152PUM1_HUMAN452-502510--
1.14aENST0000025707514aENSE00001171865chr1:31441339-31441201139PUM1_HUMAN503-549470--
1.15bENST0000025707515bENSE00000916516chr1:31440157-31440014144PUM1_HUMAN549-597490--
1.16dENST0000025707516dENSE00000916515chr1:31439125-31438829297PUM1_HUMAN597-6961000--
1.17bENST0000025707517bENSE00000916514chr1:31437757-31437521237PUM1_HUMAN696-775800--
1.18aENST0000025707518aENSE00000916513chr1:31426828-31426561268PUM1_HUMAN775-864902A:828-864
B:828-864
37
37
1.19ENST0000025707519ENSE00000916512chr1:31425210-31425081130PUM1_HUMAN864-907442A:864-907
B:864-907
44
44
1.20aENST0000025707520aENSE00001234157chr1:31423108-31422980129PUM1_HUMAN908-950432A:908-950
B:908-950
43
43
1.21bENST0000025707521bENSE00000916510chr1:31418330-31418193138PUM1_HUMAN951-996462A:951-996
B:951-996
46
46
1.22aENST0000025707522aENSE00000916508chr1:31414970-31414845126PUM1_HUMAN997-1038422A:997-1038
B:997-1038
42
42
1.23ENST0000025707523ENSE00000916506chr1:31414119-31413998122PUM1_HUMAN1039-1079412A:1039-1079
B:1039-1079
41
41
1.24cENST0000025707524cENSE00001620412chr1:31409682-31409490193PUM1_HUMAN1079-1143652A:1079-1143
B:1079-1143
65
65
1.25gENST0000025707525gENSE00001065956chr1:31406189-314043531837PUM1_HUMAN1144-1186432A:1144-1167
B:1144-1168
24
25

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with PUM1_HUMAN | Q14671 from UniProtKB/Swiss-Prot  Length:1186

    Alignment length:340
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167
          PUM1_HUMAN    828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167
               SCOP domains d1m8wa_ A: Pumilio 1                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1m8wA00 A:828-1167 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhee..eehhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PUM_HD  PDB: A:828-1167 UniProt: 828-1168                                                                                                                                                                                                                                                                                                            PROSITE (1)
                PROSITE (2) --------------------PUM  PDB: A:848-883 UniProt: 848-883PUM  PDB: A:884-919 UniProt: 884-919PUM  PDB: A:920-955 UniProt: 920-955PUM  PDB: A:956-991 UniProt: 956-991PUM  PDB: A:992-1027                PUM  PDB: A:1028-1063               PUM  PDB: A:1064-1099               ---PUM  PDB: A:1103-1142 UniProt: 1103-1142------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.18a  PDB: A:828-864           -------------------------------------------Exon 1.20a  PDB: A:908-950 UniProt: 908-950Exon 1.21b  PDB: A:951-996 UniProt: 951-996   Exon 1.22a  PDB: A:997-1038               Exon 1.23  PDB: A:1039-1079              ----------------------------------------------------------------Exon 1.25g [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.19  PDB: A:864-907 UniProt: 864-907  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24c  PDB: A:1079-1143 UniProt: 1079-1143                  ------------------------ Transcript 1 (2)
                1m8w A  828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167

Chain B from PDB  Type:PROTEIN  Length:341
 aligned with PUM1_HUMAN | Q14671 from UniProtKB/Swiss-Prot  Length:1186

    Alignment length:341
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167 
          PUM1_HUMAN    828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
               SCOP domains d1m8wb_ B: Pumilio 1                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1m8wB00 B:828-1168 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                        CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB01 B:1110-1141         --------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB02 B:1110-1141         --------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB03 B:1110-1141         --------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB04 B:1110-1141         --------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB05 B:1110-1141         --------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB06 B:1110-1141         --------------------------- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB07 B:1110-1141         --------------------------- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB08 B:1110-1141         --------------------------- Pfam domains (8)
           Pfam domains (9) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB09 B:1110-1141         --------------------------- Pfam domains (9)
          Pfam domains (10) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB10 B:1110-1141         --------------------------- Pfam domains (10)
          Pfam domains (11) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB11 B:1110-1141         --------------------------- Pfam domains (11)
          Pfam domains (12) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB12 B:1110-1141         --------------------------- Pfam domains (12)
          Pfam domains (13) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB13 B:1110-1141         --------------------------- Pfam domains (13)
          Pfam domains (14) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB14 B:1110-1141         --------------------------- Pfam domains (14)
          Pfam domains (15) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB15 B:1110-1141         --------------------------- Pfam domains (15)
          Pfam domains (16) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB16 B:1110-1141         --------------------------- Pfam domains (16)
         Sec.struct. author ..hhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PUM_HD  PDB: B:828-1168 UniProt: 828-1168                                                                                                                                                                                                                                                                                                             PROSITE (1)
                PROSITE (2) --------------------PUM  PDB: B:848-883 UniProt: 848-883PUM  PDB: B:884-919 UniProt: 884-919PUM  PDB: B:920-955 UniProt: 920-955PUM  PDB: B:956-991 UniProt: 956-991PUM  PDB: B:992-1027                PUM  PDB: B:1028-1063               PUM  PDB: B:1064-1099               ---PUM  PDB: B:1103-1142 UniProt: 1103-1142-------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.18a  PDB: B:828-864           -------------------------------------------Exon 1.20a  PDB: B:908-950 UniProt: 908-950Exon 1.21b  PDB: B:951-996 UniProt: 951-996   Exon 1.22a  PDB: B:997-1038               Exon 1.23  PDB: B:1039-1079              ----------------------------------------------------------------Exon 1.25g [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.19  PDB: B:864-907 UniProt: 864-907  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24c  PDB: B:1079-1143 UniProt: 1079-1143                  ------------------------- Transcript 1 (2)
                1m8w B  828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167 

Chain C from PDB  Type:RNA  Length:8
                                         
                1m8w C   12 UUGUAUAU   19

Chain D from PDB  Type:RNA  Length:7
                                        
                1m8w D   13 UGUAUAU   19

Chain E from PDB  Type:RNA  Length:8
                                         
                1m8w E    2 UUGUCCAG    9

Chain F from PDB  Type:RNA  Length:7
                                        
                1m8w F    3 UGUCCAG    9

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit

(-) Pfam Domains  (1, 16)

Asymmetric Unit
(-)
Clan: TPR (230)
(-)
Family: PUF (24)
1aPUF-1m8wB01B:1110-1141
1bPUF-1m8wB02B:1110-1141
1cPUF-1m8wB03B:1110-1141
1dPUF-1m8wB04B:1110-1141
1ePUF-1m8wB05B:1110-1141
1fPUF-1m8wB06B:1110-1141
1gPUF-1m8wB07B:1110-1141
1hPUF-1m8wB08B:1110-1141
1iPUF-1m8wB09B:1110-1141
1jPUF-1m8wB10B:1110-1141
1kPUF-1m8wB11B:1110-1141
1lPUF-1m8wB12B:1110-1141
1mPUF-1m8wB13B:1110-1141
1nPUF-1m8wB14B:1110-1141
1oPUF-1m8wB15B:1110-1141
1pPUF-1m8wB16B:1110-1141

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (PUM1_HUMAN | Q14671)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003730    mRNA 3'-UTR binding    Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0008344    adult locomotory behavior    Locomotory behavior in a fully developed and mature organism.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0061157    mRNA destabilization    Any process that decreases the stability of an mRNA molecule, making it more vulnerable to degradative processes. Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns.
    GO:1900246    positive regulation of RIG-I signaling pathway    Any process that activates or increases the frequency, rate or extent of RIG-I signaling pathway.
    GO:2000637    positive regulation of gene silencing by miRNA    Any process that activates or increases the frequency, rate or extent of gene silencing by miRNA.
    GO:0016441    posttranscriptional gene silencing    The inactivation of gene expression by a posttranscriptional mechanism.
    GO:0010608    posttranscriptional regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript.
    GO:0051726    regulation of cell cycle    Any process that modulates the rate or extent of progression through the cell cycle.
    GO:0051983    regulation of chromosome segregation    Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets.
    GO:0060964    regulation of gene silencing by miRNA    Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression.
    GO:0043488    regulation of mRNA stability    Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
    GO:0006417    regulation of translation    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0048863    stem cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
cellular component
    GO:0000932    P-body    A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0010494    cytoplasmic stress granule    A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        PUM1_HUMAN | Q146711ib2 1m8x 1m8y 1m8z 2yjy 3bsb 3bsx 3q0l 3q0m 3q0n 3q0o 3q0p

(-) Related Entries Specified in the PDB File

1ib2 CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN
1ib3 CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN
1m8x CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-14 RNA
1m8y CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA