1M6C - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   V68N MYOGLOBIN WITH CO

Authors :   G. N. Murshudov, S. Krzywda, A. M. Brzozowski, M. Jaskolski, E. E. Scott, S. A. Klizas, Q. H. Gibson, J. S. Olson, A. J. Wilkinson

Date :   12 Aug 98 (Deposition) - 19 Aug 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Oxygen Storage, Myoglobin, Co, Oxygen Storage/Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Krzywda, G. N. Murshudov, A. M. Brzozowski, M. Jaskolski, E. E. Scott, S. A. Klizas, Q. H. Gibson, J. S. Olson, A. J. Wilkinson
Stabilizing Bound O2 In Myoglobin By Valine68 (E11) To Asparagine Substitution.
Biochemistry V. 37 15896 1998
PubMed-ID: 9843395 | Reference-DOI: 10.1021/BI9812470
(for further references see the PDB file header)

Molecule 1 - PROTEIN (MYOGLOBIN)
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PLCII
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CMO	2	Ligand/Ion	CARBON MONOXIDE
2	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CMO	1	Ligand/Ion	CARBON MONOXIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CMO	1	Ligand/Ion	CARBON MONOXIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:42 , PHE A:43 , LYS A:45 , HIS A:64 , THR A:67 , ASN A:68 , ALA A:71 , LEU A:89 , SER A:92 , HIS A:93 , HIS A:97 , ILE A:99 , TYR A:103 , PHE A:138 , CMO A:155 , HOH A:205 , HOH A:267 , HOH A:300 , HOH A:403	BINDING SITE FOR RESIDUE HEM A 154
2	AC2	SOFTWARE	ASN A:68 , HEM A:154	BINDING SITE FOR RESIDUE CMO A 155
3	AC3	SOFTWARE	THR B:39 , LYS B:42 , PHE B:43 , LYS B:45 , HIS B:64 , THR B:67 , ASN B:68 , ALA B:71 , LEU B:89 , SER B:92 , HIS B:93 , HIS B:97 , ILE B:99 , TYR B:103 , PHE B:138 , CMO B:155 , HOH B:194 , HOH B:201 , HOH B:215	BINDING SITE FOR RESIDUE HEM B 154
4	AC4	SOFTWARE	ASN B:68 , HEM B:154	BINDING SITE FOR RESIDUE CMO B 155

(no "SS Bond" information available for 1M6C)

(no "Cis Peptide Bond" information available for 1M6C)

(no "SAP(SNP)/Variant" information available for 1M6C)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	MYG_PIG	3-148	2	A:2-147 B:2-147

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	MYG_PIG	3-148	1	A:2-147 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	MYG_PIG	3-148	1	- B:2-147

(no "Exon" information available for 1M6C)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:153
 aligned with MYG_PIG | P02189 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   
              MYG_PIG     2 GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG 154
               SCOP domains d1m6ca_ A: Myoglobin                                                                                                                                      SCOP domains
               CATH domains 1m6cA00 A:1-153 Globins                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: A:2-147 UniProt: 3-148                                                                                                               ------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6c A   1 GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTNLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:153
 aligned with MYG_PIG | P02189 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   
              MYG_PIG     2 GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG 154
               SCOP domains d1m6cb_ B: Myoglobin                                                                                                                                      SCOP domains
               CATH domains 1m6cB00 B:1-153 Globins                                                                                                                                   CATH domains
           Pfam domains (1) -----Globin-1m6cB01 B:6-112                                                                                     ----------------------------------------- Pfam domains (1)
           Pfam domains (2) -----Globin-1m6cB02 B:6-112                                                                                     ----------------------------------------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.hhh..hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: B:2-147 UniProt: 3-148                                                                                                               ------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6c B   1 GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTNLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: Myoglobin (324)

Pig (Sus scrofa) [TaxId: 9823] (17)

1a	d1m6ca_	A:
1b	d1m6cb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

Pig (Sus scrofa) (19)

1a	1m6cA00	A:1-153
1b	1m6cB00	B:1-153

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Globin (291)

Family: Globin (264)

Sus scrofa (Pig) (19)

1a	Globin-1m6cB01	B:6-112
1b	Globin-1m6cB02	B:6-112

Asymmetric Unit(hide GO term definitions)

Chain A,B (MYG_PIG | P02189)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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