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(-) Description

Title :  FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FROMYLTRANSFERASE FROM METHANOSARCINA BARKERI
 
Authors :  B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Date :  10 Jul 02  (Deposition) - 26 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Alpha/Beta Sandwich, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Mamat, A. Roth, C. Grimm, U. Ermler, C. Tziatzios, D. Schubert, R. K. Thauer, S. Shima
Crystal Structures And Enzymatic Properties Of Three Formyltransferases From Archaea: Environmental Adaptation And Evolutionary Relationship.
Protein Sci. V. 11 2168 2002
PubMed-ID: 12192072  |  Reference-DOI: 10.1110/PS.0211002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE
    ChainsA, B, C, D
    EC Number2.3.1.101
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET24B(+)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificMETHANOSARCINA BARKERI
    Organism Taxid2208
    SynonymFORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M5S)

(-) Sites  (0, 0)

(no "Site" information available for 1M5S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M5S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M5S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M5S)

(-) Exons   (0, 0)

(no "Exon" information available for 1M5S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with FTR_METBF | P55301 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_METBF      1 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQFNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF  297
               SCOP domains d1m5sa1 A:1-145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                     d1m5sa2 A:146-297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                           SCOP domains
               CATH domains 1m5sA01         1m5sA02 A:17-162  [code=3.30.70.520, no name defined]                                                                                             1m5sA01 A:1-16,A:163-297  [code=3.30.70.520, no name defined]                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eeeeeeeeeeeeeee..hhhhhhhhhhhhhh..........eeeeeeee..........eeeeeeee.hhhhhhhhhhhhhhhhh......eeee......eeehhhhhhhhhhh...eeeee..eeeeeeee..eeeeee..eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh....ee..hhhhh...................hhhhhhhhhhhh..........eeeeeeeee.hhhhhhhhhhhhhhhhh....eeeee..........eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5s A    1 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQDNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF  297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       

Chain B from PDB  Type:PROTEIN  Length:297
 aligned with FTR_METBF | P55301 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_METBF      1 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQFNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF  297
               SCOP domains d1m5sb1 B:1001-1145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5sb2 B:1146-1297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5sB01         1m5sB02 B:1017-1162  [code=3.30.70.520, no name defined]                                                                                          1m5sB01 B:1001-1016,B:1163-1297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eeeeeeeeeeeeeee..hhhhhhhhhhhhh...........eeeeeeee..........eeeeeeee.hhhhhhhhhhhhhhhhh......eeee......eeehhhhhhhhhhh...eeeee..eeeeeeee..eeeeee..eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh....ee..hhhhh................ee.hhhhhhhhh.............eeeeeeeee.hhhhhhhhhhhhhhhhh....eeeee..........eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5s B 1001 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQDNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF 1297
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290       

Chain C from PDB  Type:PROTEIN  Length:297
 aligned with FTR_METBF | P55301 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_METBF      1 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQFNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF  297
               SCOP domains d1m5sc1 C:2001-2145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5sc2 C:2146-2297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5sC01         1m5sC02 C:2017-2162  [code=3.30.70.520, no name defined]                                                                                          1m5sC01 C:2001-2016,C:2163-2297  [code=3.30.70.520, no name defined]                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eeeeeeeeeeeeeee..hhhhhhhhhhhhh...........eeeeeeee..........eeeeeeee.hhhhhhhhhhhhhhhhh......eeee......eeehhhhhhhhhhh...eeeee..eeeeeeee..eeeeee..eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh....ee..hhhhh................ee.hhhhhhhhhhhh..........eeeeeeeee.hhhhhhhhhhhhhhhhh....eeeee..........eeeehhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5s C 2001 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQDNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF 2297
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250      2260      2270      2280      2290       

Chain D from PDB  Type:PROTEIN  Length:297
 aligned with FTR_METBF | P55301 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       
           FTR_METBF      1 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQFNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF  297
               SCOP domains d1m5sd1 D:3001-3145 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                 d1m5sd2 D:3146-3297 Formylmethanofuran:tetrahydromethanopterin formyltransferase                                                                         SCOP domains
               CATH domains 1m5sD01         1m5sD02 D:3017-3162  [code=3.30.70.520, no name defined]                                                                                          1m5sD01 D:3001-3016,D:3163-3297  [code=3.30.70.520, no name defined]                                                                    CATH domains
           Pfam domains (1) FTR-1m5sD01 D:3001-3144                                                                                                                         -FTR_C-1m5sD05 D:3146-3296                                                                                                                              - Pfam domains (1)
           Pfam domains (2) FTR-1m5sD02 D:3001-3144                                                                                                                         -FTR_C-1m5sD06 D:3146-3296                                                                                                                              - Pfam domains (2)
           Pfam domains (3) FTR-1m5sD03 D:3001-3144                                                                                                                         -FTR_C-1m5sD07 D:3146-3296                                                                                                                              - Pfam domains (3)
           Pfam domains (4) FTR-1m5sD04 D:3001-3144                                                                                                                         -FTR_C-1m5sD08 D:3146-3296                                                                                                                              - Pfam domains (4)
         Sec.struct. author .....eee...eeeeeeeeeeeeeee..hhhhhhhhhhhhhh..........eeeeeeee..........eeeeeeee.hhhhhhhhhhhhhhhhh......eeee......eeehhhhhhhhhhh...eeeee..eeeeeeee..eeeeee..eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh........hhh.ee..................hhhhhhhhhhhh..........eeeeeeeee.hhhhhhhhhhhhhhhhh....eeeee..........eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1m5s D 3001 MEINGVEIEDTYAEAFPIKIARVLITAATKRWALVAATEATGFATSVIMCPAEAGIERLASPSETPDGRPGVYVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLPEAEKQDNVGFKLKFFADGMESETQIAGRKVYKVPIMEGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAAVDTIAELEGTITPFPGGIVASGSKSGANKYKFLKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAAMKAGIKAAVTVPGVKKISAGNYGGKLGKYQFKLHELF 3297
                                  3010      3020      3030      3040      3050      3060      3070      3080      3090      3100      3110      3120      3130      3140      3150      3160      3170      3180      3190      3200      3210      3220      3230      3240      3250      3260      3270      3280      3290       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
1a1m5sA02A:17-162
1b1m5sB02B:1017-1162
1c1m5sC02C:2017-2162
1d1m5sD02D:3017-3162
1e1m5sA01A:1-16,A:163-297
1f1m5sB01B:1001-1016,B:1163-1297
1g1m5sC01C:2001-2016,C:2163-2297
1h1m5sD01D:3001-3016,D:3163-3297

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Family: FTR (2)
1aFTR-1m5sD01D:3001-3144
1bFTR-1m5sD02D:3001-3144
1cFTR-1m5sD03D:3001-3144
1dFTR-1m5sD04D:3001-3144

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (FTR_METBF | P55301)
molecular function
    GO:0030270    formylmethanofuran-tetrahydromethanopterin N-formyltransferase activity    Catalysis of the reaction: 5,6,7,8-tetrahydromethanopterin + N-formylmethanofuran + H(+) = N(5)-formyl-5,6,7,8-tetrahydromethanopterin + methanofuran.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0015948    methanogenesis    The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.
    GO:0019386    methanogenesis, from carbon dioxide    The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other compounds, including carbon dioxide (CO2).
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1ftr FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM METHANOPYRUS KANDLERI
1m5h FORMYLMETHANOFURAN:TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE FROM ARCHAEOGLOBUS FULGIDUS