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Title :   AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS-COMPLEX WITH COENZYME A AND TOBRAMYCIN

Authors :   M. W. Vetting, S. S. Hegde, F. Javid-Majd, J. S. Blanchard, S. L. Roderic

Date :   02 Jul 02 (Deposition) - 28 Aug 02 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Coa Binding Motif, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, S. S. Hegde, F. Javid-Majd, J. S. Blanchard, S. L. Roderick
Aminoglycoside 2'-N-Acetyltransferase From Mycobacterium Tuberculosis In Complex With Coenzyme A And Aminoglycoside Substrates.
Nat. Struct. Biol. V. 9 653 2002
PubMed-ID: 12161746 | Reference-DOI: 10.1038/NSB830
(for further references see the PDB file header)

Molecule 1 - AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	AMINOSUGAR N-ACETYLTRANSFERASE, AAC(2')-IC

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 5)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A
2	PAP	1	Ligand/Ion	3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE
3	TOY	2	Ligand/Ion	TOBRAMYCIN

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:32 , ASP A:35 , PHE A:36 , ASP A:40 , GLU A:82 , SER A:117 , ALA A:120 , ASP A:151 , ASP A:152 , TRP A:181 , COA A:600 , HOH A:617 , HOH A:648 , HOH A:657 , HOH A:694 , HOH A:718 , HOH A:733 , HOH A:736	BINDING SITE FOR RESIDUE TOY A 500
2	AC2	SOFTWARE	ASP B:35 , PHE B:36 , ASP B:40 , GLU B:82 , SER B:117 , SER B:119 , ALA B:120 , ASP B:151 , ASP B:152 , TRP B:181 , COA B:601 , HOH B:610 , HOH B:617 , HOH B:636 , HOH B:640 , HOH B:673 , HOH B:687 , HOH B:694 , HOH B:695	BINDING SITE FOR RESIDUE TOY B 501
3	AC3	SOFTWARE	ALA A:31 , PHE A:32 , VAL A:84 , ALA A:85 , VAL A:86 , ARG A:91 , GLY A:92 , GLN A:93 , ARG A:94 , LEU A:95 , VAL A:96 , SER A:119 , ARG A:124 , TYR A:126 , TOY A:500 , HOH A:609 , HOH A:633 , HOH A:651 , HOH A:670 , HOH A:691 , HOH A:703 , HOH A:715 , ARG B:87 , ASP B:89	BINDING SITE FOR RESIDUE COA A 600
4	AC4	SOFTWARE	ALA B:31 , PHE B:32 , VAL B:84 , ALA B:85 , VAL B:86 , ARG B:91 , GLY B:92 , GLN B:93 , ARG B:94 , LEU B:95 , VAL B:96 , ARG B:121 , TYR B:126 , TOY B:501 , HOH B:630 , HOH B:668	BINDING SITE FOR RESIDUE COA B 601
5	AC5	SOFTWARE	HIS A:54 , HIS A:55 , ARG A:72 , ASP A:89 , TRP A:90 , GLN A:93 , HOH A:662 , HOH A:672 , ALA B:33 , GLY B:34 , ARG B:123 , ARG B:124	BINDING SITE FOR RESIDUE PAP A 602

(no "SS Bond" information available for 1M4D)

(no "Cis Peptide Bond" information available for 1M4D)

(no "SAP(SNP)/Variant" information available for 1M4D)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	AAC2_MYCTO	11-162	2	A:11-162 B:11-162
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	AAC2_MYCTU	11-162	2	A:11-162 B:11-162

(no "Exon" information available for 1M4D)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:181
 aligned with AAC2_MYCTO | P9WQG8 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
           AAC2_MYCTO     1 MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
               SCOP domains d1m4da_ A: Aminoglycoside 2'-N-acetyltransferase                                                                                                                                      SCOP domains
               CATH domains 1m4dA00 A:1-181  [code=3.40.630.30, no name defined]                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.hhhhhhhhhhhhhhhhhhh....hhhhhhh....eeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhh..ee....eeeee..eeee.hhhh..eeeee..........eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------GNAT  PDB: A:11-162 UniProt: 11-162                                                                                                                     ------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m4d A   1 MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain A from PDB  Type:PROTEIN  Length:181
 aligned with AAC2_MYCTU | P9WQG9 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
           AAC2_MYCTU     1 MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
               SCOP domains d1m4da_ A: Aminoglycoside 2'-N-acetyltransferase                                                                                                                                      SCOP domains
               CATH domains 1m4dA00 A:1-181  [code=3.40.630.30, no name defined]                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.hhhhhhhhhhhhhhhhhhh....hhhhhhh....eeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhh..ee....eeeee..eeee.hhhh..eeeee..........eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------GNAT  PDB: A:11-162 UniProt: 11-162                                                                                                                     ------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m4d A   1 MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:176
 aligned with AAC2_MYCTO | P9WQG8 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:176
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175      
           AAC2_MYCTO     6 HTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
               SCOP domains d1m4db_ B: Aminoglycoside 2'-N-acetyltransferase                                                                                                                                 SCOP domains
               CATH domains 1m4dB00 B:6-181  [code=3.40.630.30, no name defined]                                                                                                                             CATH domains
           Pfam domains (1) ------Acetyltransf_9-1m4dB01 B:12-133                                                                                           ------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ------Acetyltransf_9-1m4dB02 B:12-133                                                                                           ------------------------------------------------ Pfam domains (2)
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhh...eeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhh..ee....eeeee..eeee.hhhh..eeeee..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----GNAT  PDB: B:11-162 UniProt: 11-162                                                                                                                     ------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m4d B   6 HTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175

Chain B from PDB  Type:PROTEIN  Length:176
 aligned with AAC2_MYCTU | P9WQG9 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:176
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175      
           AAC2_MYCTU     6 HTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
               SCOP domains d1m4db_ B: Aminoglycoside 2'-N-acetyltransferase                                                                                                                                 SCOP domains
               CATH domains 1m4dB00 B:6-181  [code=3.40.630.30, no name defined]                                                                                                                             CATH domains
           Pfam domains (1) ------Acetyltransf_9-1m4dB01 B:12-133                                                                                           ------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ------Acetyltransf_9-1m4dB02 B:12-133                                                                                           ------------------------------------------------ Pfam domains (2)
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhh...eeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhh..ee....eeeee..eeee.hhhh..eeeee..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----GNAT  PDB: B:11-162 UniProt: 11-162                                                                                                                     ------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m4d B   6 HTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW 181
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: N-acetyl transferase, NAT (154)

Protein domain: Aminoglycoside 2'-N-acetyltransferase (4)

Mycobacterium tuberculosis [TaxId: 1773] (4)

1a	d1m4da_	A:
1b	d1m4db_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

Mycobacterium tuberculosis h37rv. Organism_taxid: 83332. Strain: h37rv. (4)

1a	1m4dB00	B:6-181
1b	1m4dA00	A:1-181

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_9 (6)

Mycobacterium tuberculosis (5)

1a	Acetyltransf_9-1m4dB01	B:12-133
1b	Acetyltransf_9-1m4dB02	B:12-133

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (AAC2_MYCTO | P9WQG8)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Chain A,B (AAC2_MYCTU | P9WQG9)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0047921	aminoglycoside 2'-N-acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + gentamicin C(1a) = N(2')-acetylgentamicin C(1a) + CoA + H(+). This is acetylation of the 2'-amino group of the 6-deoxy-6-aminoglucose ring.
	GO:0034069	aminoglycoside N-acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + N-acetylaminoglycoside.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0030649	aminoglycoside antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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UniProtKB/Swiss-Prot
	AAC2_MYCTO \| P9WQG8	:	1m44 1m4g 1m4i
	AAC2_MYCTU \| P9WQG9	:	1m44 1m4g 1m4i

1m44	AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS - APO STRUCTURE
1m4g	AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS - COMPLEX WITH COENZYME A AND RIBOSTAMYCIN
1m4i	STRUCTURE INCLUDES ONE NONPHYSIOLOGICAL COA MOLECULE BOUND TO THE EXTERIOR OF THE PROTEIN. THIS COA IS TRUNCATED TO FIT ONLY THE OBSERVED DENSITY.

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 2)

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