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(-) Description

Title :  SOLUTION STRUCTURE OF A CCHC ZINC FINGER FROM MOZ
 
Authors :  A. H. Y. Kwan, D. A. Gell, C. K. Liew, J. P. Mackay
Date :  27 Jun 02  (Deposition) - 27 Jan 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zinc Finger, Acetyl Transferase, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. H. Y. Kwan, D. A. Gell, C. K. Liew, J. P. Mackay
Solution Structure Of A Cchc Zinc Finger From Moz
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPGEX-2T
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 3-33
    GeneMOZ
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:10 , CYS A:13 , HIS A:26 , CYS A:30BINDING SITE FOR RESIDUE ZN A 34

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M36)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M36)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M36)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M36)

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003969301bENSE00001247926chr8:41909505-4190941987KAT6A_HUMAN-00--
1.2bENST000003969302bENSE00001611634chr8:41907225-41907094132KAT6A_HUMAN-00--
1.3bENST000003969303bENSE00002107560chr8:41906820-41905896925KAT6A_HUMAN1-2002000--
1.4ENST000003969304ENSE00000818786chr8:41845081-41844973109KAT6A_HUMAN201-237370--
1.5ENST000003969305ENSE00000692308chr8:41839472-41839357116KAT6A_HUMAN237-275390--
1.6ENST000003969306ENSE00000692307chr8:41838445-4183836482KAT6A_HUMAN276-303280--
1.7ENST000003969307ENSE00000692300chr8:41836295-41836160136KAT6A_HUMAN303-348460--
1.8bENST000003969308bENSE00000818785chr8:41834845-41834526320KAT6A_HUMAN348-4551080--
1.9bENST000003969309bENSE00001128473chr8:41832340-41832222119KAT6A_HUMAN455-494400--
1.11ENST0000039693011ENSE00001128468chr8:41812929-41812814116KAT6A_HUMAN495-533391A:1-3 (gaps)19
1.12ENST0000039693012ENSE00000692227chr8:41806881-41806740142KAT6A_HUMAN533-580481A:3-3331
1.13ENST0000039693013ENSE00001762740chr8:41805430-41805269162KAT6A_HUMAN581-634540--
1.14ENST0000039693014ENSE00000692210chr8:41804202-4180410994KAT6A_HUMAN635-666320--
1.15ENST0000039693015ENSE00000818792chr8:41801497-41801266232KAT6A_HUMAN666-743780--
1.16aENST0000039693016aENSE00000692156chr8:41800518-41800311208KAT6A_HUMAN743-812700--
1.17ENST0000039693017ENSE00000692153chr8:41798962-41798360603KAT6A_HUMAN813-10132010--
1.18ENST0000039693018ENSE00001040899chr8:41795086-41794774313KAT6A_HUMAN1014-11181050--
1.19bENST0000039693019bENSE00001247935chr8:41792385-417869975389KAT6A_HUMAN1118-20048870--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:33
 aligned with KAT6A_HUMAN | Q92794 from UniProtKB/Swiss-Prot  Length:2004

    Alignment length:49
                                   524       534       544       554         
          KAT6A_HUMAN   515 GKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWF 563
               SCOP domains d                1m36a_ A:                        SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author .----------------......ee......ee.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11          ------------------------------ Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.12  PDB: A:3-33          Transcript 1 (2)
                 1m36 A   1 G----------------SRLPKLYLCEFCLKYMKSRTILQQHMKKCGWF  33
                            |        -       | 4        14        24         
                            |                2                               
                            1                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1M36)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M36)

(-) Gene Ontology  (31, 31)

NMR Structure(hide GO term definitions)
Chain A   (KAT6A_HUMAN | Q92794)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0016407    acetyltransferase activity    Catalysis of the transfer of an acetyl group to an acceptor molecule.
    GO:0004402    histone acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006323    DNA packaging    Any process in which DNA and associated proteins are formed into a compact, orderly structure.
    GO:0048513    animal organ development    Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0090398    cellular senescence    A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest.
    GO:0043966    histone H3 acetylation    The modification of histone H3 by the addition of an acetyl group.
    GO:0016573    histone acetylation    The modification of a histone by the addition of an acetyl group.
    GO:0030099    myeloid cell differentiation    The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006334    nucleosome assembly    The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006473    protein acetylation    The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
    GO:1901796    regulation of signal transduction by p53 class mediator    Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0070776    MOZ/MORF histone acetyltransferase complex    A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3.
    GO:0016605    PML body    A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0000786    nucleosome    A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAT6A_HUMAN | Q927942ln0 2ozu 2rc4 3v43 4ljn 4lk9 4lka 4llb 5b75 5b76 5b77 5b78

(-) Related Entries Specified in the PDB File

1fy7 1FY7 CONTAINS ESA1 (YEAST HOMOLOGUE OF MOZ) HISTONE ACETYLTRANSFERASE DOMAIN COMPLEXED WITH COENZYME A