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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DROSOPHILA GLUTATHIONE S-TRANSFERASE-2 IN COMPLEX WITH GLUTATHIONE
 
Authors :  B. Agianian, P. A. Tucker, A. Schouten, K. Leonard, B. Bullard, P. Gros
Date :  14 Jun 02  (Deposition) - 11 Feb 03  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gst, Flight Muscle Protein, Sigma, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Agianian, P. A. Tucker, A. Schouten, K. Leonard, B. Bullard, P. Gros
Structure Of A Drosophila Sigma Class Glutathione S-Transferase Reveals A Novel Active Site Topography Suited For Lipid Peroxidation Products
J. Mol. Biol. V. 326 151 2003
PubMed-ID: 12547198  |  Reference-DOI: 10.1016/S0022-2836(02)01327-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GST2 GENE PRODUCT
    ChainsA, B
    EC Number2.5.1.18
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-3A
    Expression System StrainBL21(DE3) PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism CommonFRUIT FLY
    Organism ScientificDROSOPHILA MELANOGASTER
    Organism Taxid7227
    SynonymGLUTATHIONE S-TRANSFERASE-2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GSH1Ligand/IonGLUTATHIONE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:244 , HOH B:445 , HOH B:452 , HOH B:533BINDING SITE FOR RESIDUE SO4 B 401
2AC2SOFTWAREILE A:241 , ARG A:244 , HOH A:560 , HOH A:574 , HOH A:625BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWARETYR A:54 , PHE A:55 , LEU A:60 , TRP A:85 , GLN A:96 , MET A:97 , GLN A:109 , SER A:110 , HOH A:522BINDING SITE FOR RESIDUE GSH A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M0U)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:97 -Pro A:98
2Met B:97 -Pro B:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M0U)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.GSTS1_DROME48-125
 
  2A:48-125
B:48-125
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.GSTS1_DROME127-249
 
  2A:127-249
B:127-249

(-) Exons   (0, 0)

(no "Exon" information available for 1M0U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:203
 aligned with GSTS1_DROME | P41043 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:203
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246   
          GSTS1_DROME    47 KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV 249
               SCOP domains d1m0ua2 A:47-122 Class sigma GST                                            d1m0ua1 A:123-249 Class sigma GST                                                                                               SCOP domains
               CATH domains 1m0uA01 A:47-121,A:234-249 Glutaredoxin                                    1m0uA02 A:122-233  [code=1.20.1050.10, no name defined]                                                         1m0uA01          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: A:48-125 UniProt: 48-125                                       -GST_CTER  PDB: A:127-249 UniProt: 127-249                                                                                   PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m0u A  47 KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV 249
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246   

Chain B from PDB  Type:PROTEIN  Length:203
 aligned with GSTS1_DROME | P41043 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:203
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246   
          GSTS1_DROME    47 KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV 249
               SCOP domains d1m0ub2 B:47-122 Class sigma GST                                            d1m0ub1 B:123-249 Class sigma GST                                                                                               SCOP domains
               CATH domains 1m0uB01 B:47-121,B:234-249 Glutaredoxin                                    1m0uB02 B:122-233  [code=1.20.1050.10, no name defined]                                                         1m0uB01          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh..eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: B:48-125 UniProt: 48-125                                       -GST_CTER  PDB: B:127-249 UniProt: 127-249                                                                                   PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m0u B  47 KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV 249
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M0U)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (GSTS1_DROME | P41043)
molecular function
    GO:0004602    glutathione peroxidase activity    Catalysis of the reaction: 2 glutathione + hydrogen peroxide = oxidized glutathione + 2 H2O.
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0006749    glutathione metabolic process    The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0009636    response to toxic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1b48 1B48 IS THE CRYSTAL STRUCTURE OF MURINE GSTA4-4
1gul 1GUL IS THE CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE TRANSFERASE A4-4
1pd2 1PD2 IS THE CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE